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Model info
Transcription factorThrb
ModelTHB_MOUSE.H11DI.0.D
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
D
Motif rank
0
ConsensusnvdRKbYRbhbnRGGhhRbn
Best auROC (human)
Best auROC (mouse)0.8
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words509
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
MGIMGI:98743
EntrezGeneGeneID:21834
(SSTAR profile)
UniProt IDTHB_MOUSE
UniProt ACP37242
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.75696
0.0005 11.36331
0.0001 14.73666
GTEx tissue expression atlas Thrb expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0183.024.061.013.071.026.022.016.026.013.040.013.022.010.043.017.0
0272.09.063.058.042.02.016.013.070.05.075.016.07.03.038.011.0
0320.05.0155.011.010.01.05.03.021.04.0155.012.013.05.077.03.0
041.07.049.07.05.05.02.03.035.034.0240.083.01.02.023.03.0
057.08.018.09.024.06.06.012.030.045.072.0167.02.030.032.032.0
065.040.08.010.06.064.03.016.021.088.09.010.019.0136.020.045.0
0715.011.021.04.0271.012.015.030.031.05.04.00.051.07.011.012.0
0844.0133.0100.091.05.08.01.021.08.010.011.022.01.016.010.019.0
0914.016.020.08.034.043.09.081.015.068.020.019.016.049.024.064.0
104.018.016.041.013.042.017.0104.07.029.010.027.08.051.057.056.0
117.05.012.08.046.039.035.020.012.014.025.049.053.034.0119.022.0
1267.05.041.05.077.04.011.00.0105.01.078.07.045.02.047.05.0
139.03.0275.07.05.00.06.01.017.01.0151.08.02.00.015.00.0
141.00.031.01.02.00.02.00.021.07.0407.012.03.02.09.02.0
1524.02.00.01.06.02.00.01.0237.087.021.0104.07.04.01.03.0
1621.0218.018.017.018.055.03.019.01.020.00.01.05.080.016.08.0
1724.02.016.03.0314.08.027.024.029.01.05.02.030.05.09.01.0
1866.0109.0163.059.04.01.01.010.07.018.016.016.00.08.014.08.0
1924.07.038.08.064.021.016.035.064.046.049.035.08.017.058.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.969-0.260.663-0.860.814-0.181-0.346-0.658-0.181-0.860.244-0.86-0.346-1.1140.316-0.599
020.828-1.2150.6950.6130.293-2.584-0.658-0.860.8-1.770.868-0.658-1.454-2.2340.193-1.022
03-0.439-1.771.592-1.022-1.114-3.126-1.77-2.234-0.392-1.9751.592-0.938-0.86-1.770.894-2.234
04-3.126-1.4540.445-1.454-1.77-1.77-2.584-2.2340.1120.0832.0280.969-3.126-2.584-0.302-2.234
05-1.454-1.328-0.543-1.215-0.26-1.6-1.6-0.938-0.040.3610.8281.666-2.584-0.040.0230.023
06-1.770.244-1.328-1.114-1.60.711-2.234-0.658-0.3921.027-1.215-1.114-0.491.461-0.4390.361
07-0.721-1.022-0.392-1.9752.149-0.938-0.721-0.04-0.008-1.77-1.975-4.40.485-1.454-1.022-0.938
080.3391.4391.1551.061-1.77-1.328-3.126-0.392-1.328-1.114-1.022-0.346-3.126-0.658-1.114-0.49
09-0.788-0.658-0.439-1.3280.0830.316-1.2150.945-0.7210.771-0.439-0.49-0.6580.445-0.260.711
10-1.975-0.543-0.6580.269-0.860.293-0.5991.194-1.454-0.074-1.114-0.144-1.3280.4850.5950.578
11-1.454-1.77-0.938-1.3280.3830.2190.112-0.439-0.938-0.788-0.220.4450.5230.0831.328-0.346
120.756-1.770.269-1.770.894-1.975-1.022-4.41.203-3.1260.907-1.4540.361-2.5840.404-1.77
13-1.215-2.2342.164-1.454-1.77-4.4-1.6-3.126-0.599-3.1261.565-1.328-2.584-4.4-0.721-4.4
14-3.126-4.4-0.008-3.126-2.584-4.4-2.584-4.4-0.392-1.4542.555-0.938-2.234-2.584-1.215-2.584
15-0.26-2.584-4.4-3.126-1.6-2.584-4.4-3.1262.0151.016-0.3921.194-1.454-1.975-3.126-2.234
16-0.3921.932-0.543-0.599-0.5430.56-2.234-0.49-3.126-0.439-4.4-3.126-1.770.932-0.658-1.328
17-0.26-2.584-0.658-2.2342.296-1.328-0.144-0.26-0.074-3.126-1.77-2.584-0.04-1.77-1.215-3.126
180.7411.2411.6420.63-1.975-3.126-3.126-1.114-1.454-0.543-0.658-0.658-4.4-1.328-0.788-1.328
19-0.26-1.4540.193-1.3280.711-0.392-0.6580.1120.7110.3830.4450.112-1.328-0.5990.613-1.114