Model info
| Transcription factor | Thrb | ||||||||
| Model | THB_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRGSdYAnhbnRGGhMW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.784 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Thyroid hormone receptors (NR1A) {2.1.2.2} | ||||||||
| MGI | MGI:98743 | ||||||||
| EntrezGene | GeneID:21834 (SSTAR profile) | ||||||||
| UniProt ID | THB_MOUSE | ||||||||
| UniProt AC | P37242 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Thrb expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 192.0 | 76.0 | 171.0 | 61.0 |
| 02 | 213.0 | 5.0 | 196.0 | 86.0 |
| 03 | 63.0 | 13.0 | 399.0 | 25.0 |
| 04 | 60.0 | 66.0 | 319.0 | 55.0 |
| 05 | 107.0 | 72.0 | 101.0 | 220.0 |
| 06 | 26.0 | 374.0 | 48.0 | 52.0 |
| 07 | 420.0 | 21.0 | 21.0 | 38.0 |
| 08 | 43.0 | 176.0 | 176.0 | 105.0 |
| 09 | 85.0 | 161.0 | 73.0 | 181.0 |
| 10 | 47.0 | 135.0 | 118.0 | 200.0 |
| 11 | 125.0 | 107.0 | 178.0 | 90.0 |
| 12 | 299.0 | 9.0 | 172.0 | 20.0 |
| 13 | 60.0 | 2.0 | 425.0 | 13.0 |
| 14 | 42.0 | 25.0 | 428.0 | 5.0 |
| 15 | 260.0 | 102.0 | 45.0 | 93.0 |
| 16 | 59.0 | 350.0 | 54.0 | 37.0 |
| 17 | 380.0 | 32.0 | 36.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.425 | -0.49 | 0.31 | -0.705 |
| 02 | 0.528 | -2.961 | 0.445 | -0.368 |
| 03 | -0.673 | -2.163 | 1.152 | -1.561 |
| 04 | -0.721 | -0.628 | 0.929 | -0.805 |
| 05 | -0.153 | -0.543 | -0.21 | 0.56 |
| 06 | -1.525 | 1.088 | -0.938 | -0.86 |
| 07 | 1.203 | -1.725 | -1.725 | -1.163 |
| 08 | -1.044 | 0.339 | 0.339 | -0.172 |
| 09 | -0.38 | 0.25 | -0.529 | 0.366 |
| 10 | -0.958 | 0.076 | -0.057 | 0.465 |
| 11 | 0.0 | -0.153 | 0.35 | -0.324 |
| 12 | 0.865 | -2.484 | 0.316 | -1.77 |
| 13 | -0.721 | -3.573 | 1.215 | -2.163 |
| 14 | -1.067 | -1.561 | 1.222 | -2.961 |
| 15 | 0.726 | -0.201 | -1.0 | -0.291 |
| 16 | -0.737 | 1.022 | -0.823 | -1.189 |
| 17 | 1.104 | -1.328 | -1.215 | -0.86 |