Transcription factor | TLX1 (GeneCards) | ||||||||
Model | TLX1_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 17 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | hYKKYAvbndvMYnRKd | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 50 | ||||||||
TF family | NK-related factors {3.1.2} | ||||||||
TF subfamily | TLX {3.1.2.21} | ||||||||
HGNC | HGNC:5056 | ||||||||
EntrezGene | GeneID:3195 (SSTAR profile) | ||||||||
UniProt ID | TLX1_HUMAN | ||||||||
UniProt AC | P31314 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | TLX1 expression | ||||||||
ReMap ChIP-seq dataset list | TLX1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 9.236 | 21.151 | 7.605 | 12.008 |
02 | 1.631 | 17.946 | 2.538 | 27.884 |
03 | 0.816 | 1.631 | 36.132 | 11.42 |
04 | 7.342 | 3.263 | 30.332 | 9.064 |
05 | 0.816 | 27.884 | 0.816 | 20.484 |
06 | 42.334 | 1.386 | 0.816 | 5.465 |
07 | 19.177 | 17.613 | 7.745 | 5.465 |
08 | 5.219 | 15.982 | 16.148 | 12.651 |
09 | 13.78 | 7.096 | 12.64 | 16.484 |
10 | 14.517 | 4.973 | 13.467 | 17.043 |
11 | 8.157 | 8.157 | 33.685 | 0.0 |
12 | 11.42 | 31.238 | 0.0 | 7.342 |
13 | 2.447 | 33.595 | 0.0 | 13.958 |
14 | 25.437 | 6.617 | 8.973 | 8.973 |
15 | 33.27 | 0.816 | 8.728 | 7.187 |
16 | 3.588 | 5.219 | 29.94 | 11.254 |
17 | 14.126 | 6.627 | 20.418 | 8.828 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.277 | 0.496 | -0.451 | -0.037 |
02 | -1.642 | 0.339 | -1.344 | 0.761 |
03 | -2.017 | -1.642 | 1.013 | -0.083 |
04 | -0.482 | -1.156 | 0.843 | -0.294 |
05 | -2.017 | 0.761 | -2.017 | 0.465 |
06 | 1.167 | -1.741 | -2.017 | -0.738 |
07 | 0.402 | 0.322 | -0.435 | -0.738 |
08 | -0.777 | 0.23 | 0.24 | 0.011 |
09 | 0.091 | -0.512 | 0.01 | 0.259 |
10 | 0.139 | -0.817 | 0.069 | 0.29 |
11 | -0.389 | -0.389 | 0.945 | -2.623 |
12 | -0.083 | 0.871 | -2.623 | -0.482 |
13 | -1.37 | 0.942 | -2.623 | 0.103 |
14 | 0.673 | -0.574 | -0.303 | -0.303 |
15 | 0.933 | -2.017 | -0.328 | -0.501 |
16 | -1.083 | -0.777 | 0.83 | -0.097 |
17 | 0.114 | -0.572 | 0.462 | -0.318 |