We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTWIST1
(GeneCards)
ModelTWST1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusvCAKMTGKWWbbvRTYW
Best auROC (human)0.969
Best auROC (mouse)0.539
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)8
Aligned words497
TF familyTal-related factors {1.2.3}
TF subfamilyTwist-like factors {1.2.3.2}
HGNCHGNC:12428
EntrezGeneGeneID:7291
(SSTAR profile)
UniProt IDTWST1_HUMAN
UniProt ACQ15672
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.64816
0.0005 5.68551
0.0001 7.8365100000000005
GTEx tissue expression atlas TWIST1 expression
ReMap ChIP-seq dataset list TWIST1 datasets
Motifs in JASPAR
PCM
ACGT
01252.0133.077.035.0
0235.0432.014.016.0
03459.07.017.014.0
045.041.091.0360.0
0598.0349.040.010.0
061.02.01.0493.0
070.04.0481.012.0
0813.072.0266.0146.0
09145.037.043.0272.0
10142.047.035.0273.0
1158.0133.059.0247.0
1230.0179.045.0243.0
13216.0145.080.056.0
14390.028.044.035.0
158.017.026.0446.0
1646.092.017.0342.0
17326.018.018.0135.0
PWM
ACGT
010.7010.067-0.471-1.236
02-1.2361.237-2.091-1.97
031.298-2.689-1.914-2.091
04-2.955-1.084-0.3071.056
05-0.2341.025-1.108-2.388
06-3.898-3.567-3.8981.369
07-4.395-3.1211.344-2.228
08-2.157-0.5370.7550.159
090.153-1.183-1.0380.777
100.132-0.952-1.2360.78
11-0.7480.067-0.7310.681
12-1.3830.361-0.9940.665
130.5480.153-0.433-0.782
141.135-1.449-1.016-1.236
15-2.578-1.914-1.5191.269
16-0.973-0.296-1.9141.005
170.957-1.862-1.8620.082