We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTWIST1
(GeneCards)
ModelTWST1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusnvCATSTGKW
Best auROC (human)0.971
Best auROC (mouse)0.567
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)8
Aligned words502
TF familyTal-related factors {1.2.3}
TF subfamilyTwist-like factors {1.2.3.2}
HGNCHGNC:12428
EntrezGeneGeneID:7291
(SSTAR profile)
UniProt IDTWST1_HUMAN
UniProt ACQ15672
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.08278
0.0005 6.04882
0.0001 7.83901
GTEx tissue expression atlas TWIST1 expression
ReMap ChIP-seq dataset list TWIST1 datasets
Motifs in JASPAR
PCM
ACGT
01157.0164.0115.064.0
02226.0161.083.030.0
0325.0471.03.01.0
04490.05.03.02.0
052.07.097.0394.0
0648.0374.067.011.0
075.00.01.0494.0
081.02.0494.03.0
0916.071.0296.0117.0
10161.030.044.0265.0
PWM
ACGT
010.2250.269-0.082-0.658
020.5870.25-0.403-1.389
03-1.5611.317-3.325-3.903
041.357-2.961-3.325-3.573
05-3.573-2.694-0.251.14
06-0.9381.088-0.613-2.311
07-2.961-4.4-3.9031.365
08-3.903-3.5731.365-3.325
09-1.975-0.5560.855-0.065
100.25-1.389-1.0220.745