Model info
| Transcription factor | TWIST1 (GeneCards) | ||||||||
| Model | TWST1_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | nvCATSTGKW | ||||||||
| Best auROC (human) | 0.971 | ||||||||
| Best auROC (mouse) | 0.567 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
| HGNC | HGNC:12428 | ||||||||
| EntrezGene | GeneID:7291 (SSTAR profile) | ||||||||
| UniProt ID | TWST1_HUMAN | ||||||||
| UniProt AC | Q15672 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TWIST1 expression | ||||||||
| ReMap ChIP-seq dataset list | TWIST1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 157.0 | 164.0 | 115.0 | 64.0 |
| 02 | 226.0 | 161.0 | 83.0 | 30.0 |
| 03 | 25.0 | 471.0 | 3.0 | 1.0 |
| 04 | 490.0 | 5.0 | 3.0 | 2.0 |
| 05 | 2.0 | 7.0 | 97.0 | 394.0 |
| 06 | 48.0 | 374.0 | 67.0 | 11.0 |
| 07 | 5.0 | 0.0 | 1.0 | 494.0 |
| 08 | 1.0 | 2.0 | 494.0 | 3.0 |
| 09 | 16.0 | 71.0 | 296.0 | 117.0 |
| 10 | 161.0 | 30.0 | 44.0 | 265.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.225 | 0.269 | -0.082 | -0.658 |
| 02 | 0.587 | 0.25 | -0.403 | -1.389 |
| 03 | -1.561 | 1.317 | -3.325 | -3.903 |
| 04 | 1.357 | -2.961 | -3.325 | -3.573 |
| 05 | -3.573 | -2.694 | -0.25 | 1.14 |
| 06 | -0.938 | 1.088 | -0.613 | -2.311 |
| 07 | -2.961 | -4.4 | -3.903 | 1.365 |
| 08 | -3.903 | -3.573 | 1.365 | -3.325 |
| 09 | -1.975 | -0.556 | 0.855 | -0.065 |
| 10 | 0.25 | -1.389 | -1.022 | 0.745 |