Model info
| Transcription factor | Twist1 | ||||||||
| Model | TWST1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCAKMTGKWhbbvATYW | ||||||||
| Best auROC (human) | 0.969 | ||||||||
| Best auROC (mouse) | 0.594 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
| MGI | MGI:98872 | ||||||||
| EntrezGene | GeneID:22160 (SSTAR profile) | ||||||||
| UniProt ID | TWST1_MOUSE | ||||||||
| UniProt AC | P26687 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Twist1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 224.0 | 141.0 | 91.0 | 44.0 |
| 02 | 27.0 | 448.0 | 16.0 | 9.0 |
| 03 | 451.0 | 10.0 | 23.0 | 16.0 |
| 04 | 9.0 | 32.0 | 129.0 | 330.0 |
| 05 | 107.0 | 340.0 | 49.0 | 4.0 |
| 06 | 4.0 | 1.0 | 0.0 | 495.0 |
| 07 | 0.0 | 1.0 | 492.0 | 7.0 |
| 08 | 8.0 | 62.0 | 301.0 | 129.0 |
| 09 | 138.0 | 36.0 | 45.0 | 281.0 |
| 10 | 140.0 | 50.0 | 40.0 | 270.0 |
| 11 | 51.0 | 145.0 | 62.0 | 242.0 |
| 12 | 30.0 | 170.0 | 58.0 | 242.0 |
| 13 | 186.0 | 144.0 | 107.0 | 63.0 |
| 14 | 408.0 | 29.0 | 32.0 | 31.0 |
| 15 | 15.0 | 20.0 | 38.0 | 427.0 |
| 16 | 52.0 | 82.0 | 17.0 | 349.0 |
| 17 | 314.0 | 23.0 | 36.0 | 127.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.578 | 0.119 | -0.313 | -1.022 |
| 02 | -1.489 | 1.268 | -1.975 | -2.484 |
| 03 | 1.274 | -2.394 | -1.64 | -1.975 |
| 04 | -2.484 | -1.328 | 0.031 | 0.963 |
| 05 | -0.153 | 0.993 | -0.918 | -3.126 |
| 06 | -3.126 | -3.903 | -4.4 | 1.367 |
| 07 | -4.4 | -3.903 | 1.361 | -2.694 |
| 08 | -2.584 | -0.689 | 0.872 | 0.031 |
| 09 | 0.098 | -1.215 | -1.0 | 0.803 |
| 10 | 0.112 | -0.898 | -1.114 | 0.763 |
| 11 | -0.879 | 0.147 | -0.689 | 0.655 |
| 12 | -1.389 | 0.304 | -0.754 | 0.655 |
| 13 | 0.393 | 0.14 | -0.153 | -0.673 |
| 14 | 1.174 | -1.421 | -1.328 | -1.358 |
| 15 | -2.034 | -1.77 | -1.163 | 1.22 |
| 16 | -0.86 | -0.415 | -1.92 | 1.019 |
| 17 | 0.914 | -1.64 | -1.215 | 0.016 |