Model info
| Transcription factor | Twist1 | ||||||||
| Model | TWST1_MOUSE.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vvCAKCTGKhh | ||||||||
| Best auROC (human) | 0.978 | ||||||||
| Best auROC (mouse) | 0.604 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 470 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
| MGI | MGI:98872 | ||||||||
| EntrezGene | GeneID:22160 (SSTAR profile) | ||||||||
| UniProt ID | TWST1_MOUSE | ||||||||
| UniProt AC | P26687 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Twist1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 161.0 | 131.0 | 128.0 | 47.0 |
| 02 | 241.0 | 110.0 | 93.0 | 23.0 |
| 03 | 11.0 | 438.0 | 7.0 | 11.0 |
| 04 | 407.0 | 26.0 | 14.0 | 20.0 |
| 05 | 7.0 | 26.0 | 80.0 | 354.0 |
| 06 | 32.0 | 392.0 | 34.0 | 9.0 |
| 07 | 5.0 | 1.0 | 0.0 | 461.0 |
| 08 | 1.0 | 6.0 | 458.0 | 2.0 |
| 09 | 14.0 | 92.0 | 264.0 | 97.0 |
| 10 | 127.0 | 88.0 | 48.0 | 204.0 |
| 11 | 119.0 | 93.0 | 65.0 | 190.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.318 | 0.114 | 0.091 | -0.891 |
| 02 | 0.718 | -0.059 | -0.224 | -1.573 |
| 03 | -2.244 | 1.313 | -2.629 | -2.244 |
| 04 | 1.239 | -1.458 | -2.03 | -1.703 |
| 05 | -2.629 | -1.458 | -0.372 | 1.101 |
| 06 | -1.26 | 1.202 | -1.203 | -2.418 |
| 07 | -2.896 | -3.842 | -4.344 | 1.364 |
| 08 | -3.842 | -2.753 | 1.357 | -3.51 |
| 09 | -2.03 | -0.235 | 0.809 | -0.183 |
| 10 | 0.083 | -0.278 | -0.87 | 0.553 |
| 11 | 0.019 | -0.224 | -0.575 | 0.482 |