Model info
| Transcription factor | YY1 (GeneCards) | ||||||||
| Model | TYY1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | MAARATGGCKSM | ||||||||
| Best auROC (human) | 0.981 | ||||||||
| Best auROC (mouse) | 0.989 | ||||||||
| Peak sets in benchmark (human) | 69 | ||||||||
| Peak sets in benchmark (mouse) | 72 | ||||||||
| Aligned words | 453 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | YY1-like factors {2.3.3.9} | ||||||||
| HGNC | HGNC:12856 | ||||||||
| EntrezGene | GeneID:7528 (SSTAR profile) | ||||||||
| UniProt ID | TYY1_HUMAN | ||||||||
| UniProt AC | P25490 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | YY1 expression | ||||||||
| ReMap ChIP-seq dataset list | YY1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 95.0 | 288.0 | 42.0 | 28.0 |
| 02 | 439.0 | 0.0 | 14.0 | 0.0 |
| 03 | 434.0 | 7.0 | 5.0 | 7.0 |
| 04 | 135.0 | 47.0 | 249.0 | 22.0 |
| 05 | 451.0 | 0.0 | 1.0 | 1.0 |
| 06 | 0.0 | 1.0 | 3.0 | 449.0 |
| 07 | 0.0 | 0.0 | 453.0 | 0.0 |
| 08 | 5.0 | 0.0 | 444.0 | 4.0 |
| 09 | 11.0 | 439.0 | 0.0 | 3.0 |
| 10 | 14.0 | 58.0 | 321.0 | 60.0 |
| 11 | 48.0 | 54.0 | 318.0 | 33.0 |
| 12 | 58.0 | 337.0 | 23.0 | 35.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.173 | 0.925 | -0.97 | -1.358 |
| 02 | 1.345 | -4.318 | -2.0 | -4.318 |
| 03 | 1.334 | -2.6 | -2.867 | -2.6 |
| 04 | 0.174 | -0.861 | 0.781 | -1.585 |
| 05 | 1.372 | -4.318 | -3.815 | -3.815 |
| 06 | -4.318 | -3.815 | -3.233 | 1.367 |
| 07 | -4.318 | -4.318 | 1.376 | -4.318 |
| 08 | -2.867 | -4.318 | 1.356 | -3.033 |
| 09 | -2.215 | 1.345 | -4.318 | -3.233 |
| 10 | -2.0 | -0.657 | 1.033 | -0.624 |
| 11 | -0.84 | -0.726 | 1.024 | -1.201 |
| 12 | -0.657 | 1.082 | -1.543 | -1.145 |