TYY2_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

YY2
(GeneCards)

Model

TYY2_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

HT-SELEX

Model release

HOCOMOCOv10

Model length

11

Quality

D

Motif rank

0

Consensus

WhvATGGCGGn

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

943

TF family

More than 3 adjacent zinc finger factors {2.3.3}

TF subfamily

YY1-like factors {2.3.3.9}

HGNC

EntrezGene

GeneID:404281
(SSTAR profile)

UniProt ID

UniProt AC

O15391
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	2.9781649999999997
0.0005	4.05184
0.0001	6.1020199999999996

GTEx tissue expression atlas

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0748.1 (YY2; Homo sapiens)

PCM

	A	C	G	T
01	498.018	43.078	116.411	153.524
02	373.189	76.192	61.475	300.174
03	481.771	94.398	151.676	83.185
04	787.711	7.773	7.773	7.773
05	7.94	0.167	0.167	802.755
06	0.0	0.0	811.03	0.0
07	0.0	0.0	811.03	0.0
08	10.449	783.028	7.104	10.449
09	23.741	11.54	767.554	8.195
10	46.526	41.843	667.438	55.223
11	240.985	267.84	126.27	175.934

PWM

	A	C	G	T
01	0.894	-1.519	-0.549	-0.276
02	0.606	-0.965	-1.175	0.39
03	0.861	-0.755	-0.288	-0.879
04	1.351	-3.074	-3.074	-3.074
05	-3.057	-4.709	-4.709	1.37
06	-4.805	-4.805	1.38	-4.805
07	-4.805	-4.805	1.38	-4.805
08	-2.825	1.345	-3.148	-2.825
09	-2.085	-2.739	1.325	-3.031
10	-1.445	-1.547	1.186	-1.279
11	0.171	0.276	-0.469	-0.141