We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorUBP1
(GeneCards)
ModelUBIP1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
0
ConsensusnCAGAdA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familyCP2-related factors {6.7.2}
TF subfamilyUBP-1 (LBP-1, SEF) {6.7.2.0.3}
HGNCHGNC:12507
EntrezGeneGeneID:7342
(SSTAR profile)
UniProt IDUBIP1_HUMAN
UniProt ACQ9NZI7
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.848215
0.0005 5.543895
0.0001 5.60469
GTEx tissue expression atlas UBP1 expression
ReMap ChIP-seq dataset list UBP1 datasets
Motifs in JASPAR
PCM
ACGT
010.1792.3212.3210.179
020.04.2860.00.714
035.00.00.00.0
040.00.03.5711.429
055.00.00.00.0
062.1430.02.1430.714
074.4640.1790.1790.179
PWM
ACGT
01-1.0450.50.5-1.045
02-1.4131.043-1.413-0.392
031.185-1.413-1.413-1.413
04-1.413-1.4130.8780.103
051.185-1.413-1.413-1.413
060.432-1.4130.432-0.392
071.08-1.045-1.045-1.045