Model info
| Transcription factor | Ubp1 | ||||||||
| Model | UBIP1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nCAGAdA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 5 | ||||||||
| TF family | CP2-related factors {6.7.2} | ||||||||
| TF subfamily | UBP-1 (LBP-1, SEF, CP2b) {6.7.2.0.3} | ||||||||
| MGI | MGI:104889 | ||||||||
| EntrezGene | GeneID:22221 (SSTAR profile) | ||||||||
| UniProt ID | UBIP1_MOUSE | ||||||||
| UniProt AC | Q811S7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ubp1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.179 | 2.321 | 2.321 | 0.179 |
| 02 | 0.0 | 4.286 | 0.0 | 0.714 |
| 03 | 5.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 3.571 | 1.429 |
| 05 | 5.0 | 0.0 | 0.0 | 0.0 |
| 06 | 2.143 | 0.0 | 2.143 | 0.714 |
| 07 | 4.464 | 0.179 | 0.179 | 0.179 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.045 | 0.5 | 0.5 | -1.045 |
| 02 | -1.413 | 1.043 | -1.413 | -0.392 |
| 03 | 1.185 | -1.413 | -1.413 | -1.413 |
| 04 | -1.413 | -1.413 | 0.878 | 0.103 |
| 05 | 1.185 | -1.413 | -1.413 | -1.413 |
| 06 | 0.432 | -1.413 | 0.432 | -0.392 |
| 07 | 1.08 | -1.045 | -1.045 | -1.045 |