We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorUSF1
(GeneCards)
ModelUSF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusvGTCACGTGvbb
Best auROC (human)0.998
Best auROC (mouse)0.98
Peak sets in benchmark (human)59
Peak sets in benchmark (mouse)7
Aligned words485
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyUSF factors {1.2.6.2}
HGNCHGNC:12593
EntrezGeneGeneID:7391
(SSTAR profile)
UniProt IDUSF1_HUMAN
UniProt ACP22415
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.43741
0.0005 2.7350149999999998
0.0001 5.317915
GTEx tissue expression atlas USF1 expression
ReMap ChIP-seq dataset list USF1 datasets
Motifs in JASPAR
MA0093.1 (USF1; Homo sapiens)
MA0093.2 (USF1; Homo sapiens)
PCM
ACGT
01116.075.0231.058.0
0249.06.0425.00.0
039.010.011.0450.0
040.0480.00.00.0
05477.00.01.02.0
060.0461.06.013.0
0781.03.0396.00.0
082.04.01.0473.0
090.00.0480.00.0
10195.080.0186.019.0
1123.0225.0117.0115.0
1246.0233.0147.054.0
PWM
ACGT
01-0.033-0.4620.649-0.714
02-0.877-2.781.255-4.366
03-2.445-2.354-2.2711.312
04-4.3661.377-4.366-4.366
051.37-4.366-3.867-3.535
06-4.3661.336-2.78-2.123
07-0.387-3.2871.185-4.366
08-3.535-3.088-3.8671.362
09-4.366-4.3661.377-4.366
100.481-0.3990.434-1.778
11-1.60.623-0.025-0.042
12-0.9390.6570.201-0.783