Model info
| Transcription factor | USF1 (GeneCards) | ||||||||
| Model | USF1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vGTCACGTGvbb | ||||||||
| Best auROC (human) | 0.998 | ||||||||
| Best auROC (mouse) | 0.98 | ||||||||
| Peak sets in benchmark (human) | 59 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 485 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | USF factors {1.2.6.2} | ||||||||
| HGNC | HGNC:12593 | ||||||||
| EntrezGene | GeneID:7391 (SSTAR profile) | ||||||||
| UniProt ID | USF1_HUMAN | ||||||||
| UniProt AC | P22415 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | USF1 expression | ||||||||
| ReMap ChIP-seq dataset list | USF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 116.0 | 75.0 | 231.0 | 58.0 |
| 02 | 49.0 | 6.0 | 425.0 | 0.0 |
| 03 | 9.0 | 10.0 | 11.0 | 450.0 |
| 04 | 0.0 | 480.0 | 0.0 | 0.0 |
| 05 | 477.0 | 0.0 | 1.0 | 2.0 |
| 06 | 0.0 | 461.0 | 6.0 | 13.0 |
| 07 | 81.0 | 3.0 | 396.0 | 0.0 |
| 08 | 2.0 | 4.0 | 1.0 | 473.0 |
| 09 | 0.0 | 0.0 | 480.0 | 0.0 |
| 10 | 195.0 | 80.0 | 186.0 | 19.0 |
| 11 | 23.0 | 225.0 | 117.0 | 115.0 |
| 12 | 46.0 | 233.0 | 147.0 | 54.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.033 | -0.462 | 0.649 | -0.714 |
| 02 | -0.877 | -2.78 | 1.255 | -4.366 |
| 03 | -2.445 | -2.354 | -2.271 | 1.312 |
| 04 | -4.366 | 1.377 | -4.366 | -4.366 |
| 05 | 1.37 | -4.366 | -3.867 | -3.535 |
| 06 | -4.366 | 1.336 | -2.78 | -2.123 |
| 07 | -0.387 | -3.287 | 1.185 | -4.366 |
| 08 | -3.535 | -3.088 | -3.867 | 1.362 |
| 09 | -4.366 | -4.366 | 1.377 | -4.366 |
| 10 | 0.481 | -0.399 | 0.434 | -1.778 |
| 11 | -1.6 | 0.623 | -0.025 | -0.042 |
| 12 | -0.939 | 0.657 | 0.201 | -0.783 |