Model info
| Transcription factor | USF2 (GeneCards) | ||||||||
| Model | USF2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvGTCACGTGvbvvbbvbb | ||||||||
| Best auROC (human) | 0.998 | ||||||||
| Best auROC (mouse) | 0.998 | ||||||||
| Peak sets in benchmark (human) | 23 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | USF factors {1.2.6.2} | ||||||||
| HGNC | HGNC:12594 | ||||||||
| EntrezGene | GeneID:7392 (SSTAR profile) | ||||||||
| UniProt ID | USF2_HUMAN | ||||||||
| UniProt AC | Q15853 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | USF2 expression | ||||||||
| ReMap ChIP-seq dataset list | USF2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 108.075 | 103.762 | 223.738 | 64.424 |
| 02 | 102.148 | 69.523 | 273.067 | 55.262 |
| 03 | 57.856 | 8.053 | 432.47 | 1.621 |
| 04 | 7.352 | 23.971 | 18.436 | 450.241 |
| 05 | 0.864 | 499.136 | 0.0 | 0.0 |
| 06 | 496.377 | 0.0 | 1.755 | 1.868 |
| 07 | 0.0 | 462.82 | 10.814 | 26.366 |
| 08 | 50.956 | 0.0 | 449.044 | 0.0 |
| 09 | 1.676 | 3.803 | 1.947 | 492.574 |
| 10 | 0.897 | 0.0 | 497.902 | 1.201 |
| 11 | 168.824 | 84.127 | 197.81 | 49.239 |
| 12 | 29.19 | 224.309 | 133.239 | 113.263 |
| 13 | 59.507 | 232.792 | 166.949 | 40.751 |
| 14 | 125.847 | 148.962 | 165.189 | 60.002 |
| 15 | 64.042 | 185.309 | 182.629 | 68.021 |
| 16 | 63.012 | 164.861 | 192.346 | 79.78 |
| 17 | 80.906 | 163.005 | 194.247 | 61.842 |
| 18 | 63.555 | 189.516 | 156.604 | 90.325 |
| 19 | 61.123 | 137.251 | 192.58 | 109.047 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.144 | -0.184 | 0.577 | -0.651 |
| 02 | -0.199 | -0.577 | 0.775 | -0.801 |
| 03 | -0.756 | -2.578 | 1.232 | -3.686 |
| 04 | -2.654 | -1.601 | -1.845 | 1.273 |
| 05 | -3.958 | 1.375 | -4.4 | -4.4 |
| 06 | 1.37 | -4.4 | -3.644 | -3.61 |
| 07 | -4.4 | 1.3 | -2.326 | -1.511 |
| 08 | -0.88 | -4.4 | 1.27 | -4.4 |
| 09 | -3.668 | -3.162 | -3.588 | 1.362 |
| 10 | -3.944 | -4.4 | 1.373 | -3.827 |
| 11 | 0.297 | -0.39 | 0.454 | -0.913 |
| 12 | -1.415 | 0.579 | 0.063 | -0.097 |
| 13 | -0.729 | 0.616 | 0.286 | -1.096 |
| 14 | 0.007 | 0.173 | 0.276 | -0.721 |
| 15 | -0.657 | 0.39 | 0.375 | -0.598 |
| 16 | -0.673 | 0.274 | 0.427 | -0.442 |
| 17 | -0.428 | 0.263 | 0.436 | -0.691 |
| 18 | -0.665 | 0.412 | 0.223 | -0.32 |
| 19 | -0.703 | 0.092 | 0.428 | -0.135 |