Model info
| Transcription factor | VAX1 (GeneCards) | ||||||||
| Model | VAX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 18 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvTAATTARbvKWAWTWd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 50 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | VAX {3.1.2.22} | ||||||||
| HGNC | HGNC:12660 | ||||||||
| EntrezGene | GeneID:11023 (SSTAR profile) | ||||||||
| UniProt ID | VAX1_HUMAN | ||||||||
| UniProt AC | Q5SQQ9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | VAX1 expression | ||||||||
| ReMap ChIP-seq dataset list | VAX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.5 | 6.5 | 18.5 | 7.5 |
| 02 | 8.0 | 16.0 | 20.0 | 6.0 |
| 03 | 3.0 | 3.0 | 3.0 | 41.0 |
| 04 | 50.0 | 0.0 | 0.0 | 0.0 |
| 05 | 50.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 50.0 |
| 07 | 0.0 | 0.0 | 0.0 | 50.0 |
| 08 | 50.0 | 0.0 | 0.0 | 0.0 |
| 09 | 9.0 | 2.0 | 36.0 | 3.0 |
| 10 | 1.0 | 14.0 | 18.0 | 17.0 |
| 11 | 9.0 | 15.0 | 24.0 | 2.0 |
| 12 | 5.0 | 5.0 | 11.0 | 29.0 |
| 13 | 16.0 | 8.0 | 1.0 | 25.0 |
| 14 | 40.0 | 2.0 | 0.0 | 8.0 |
| 15 | 29.0 | 1.0 | 0.0 | 20.0 |
| 16 | 9.25 | 0.25 | 0.25 | 40.25 |
| 17 | 14.0 | 3.0 | 5.0 | 28.0 |
| 18 | 23.75 | 4.75 | 7.75 | 13.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.316 | -0.589 | 0.368 | -0.464 |
| 02 | -0.406 | 0.231 | 0.442 | -0.658 |
| 03 | -1.22 | -1.22 | -1.22 | 1.136 |
| 04 | 1.33 | -2.623 | -2.623 | -2.623 |
| 05 | 1.33 | -2.623 | -2.623 | -2.623 |
| 06 | -2.623 | -2.623 | -2.623 | 1.33 |
| 07 | -2.623 | -2.623 | -2.623 | 1.33 |
| 08 | 1.33 | -2.623 | -2.623 | -2.623 |
| 09 | -0.301 | -1.51 | 1.009 | -1.22 |
| 10 | -1.919 | 0.106 | 0.342 | 0.288 |
| 11 | -0.301 | 0.17 | 0.617 | -1.51 |
| 12 | -0.813 | -0.813 | -0.118 | 0.799 |
| 13 | 0.231 | -0.406 | -1.919 | 0.656 |
| 14 | 1.112 | -1.51 | -2.623 | -0.406 |
| 15 | 0.799 | -1.919 | -2.623 | 0.442 |
| 16 | -0.276 | -2.396 | -2.396 | 1.118 |
| 17 | 0.106 | -1.22 | -0.813 | 0.765 |
| 18 | 0.607 | -0.856 | -0.435 | 0.089 |