We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorVAX2
(GeneCards)
ModelVAX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusdndddvbTAATTARbR
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words51
TF familyNK-related factors {3.1.2}
TF subfamilyVAX {3.1.2.22}
HGNCHGNC:12661
EntrezGeneGeneID:25806
(SSTAR profile)
UniProt IDVAX2_HUMAN
UniProt ACQ9UIW0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.31321
0.0005 6.1220099999999995
0.0001 7.79166
GTEx tissue expression atlas VAX2 expression
ReMap ChIP-seq dataset list VAX2 datasets
Motifs in JASPAR
MA0723.1 (VAX2; Homo sapiens)
PCM
ACGT
0117.57.59.516.5
0217.758.756.7517.75
0316.254.259.2521.25
0426.753.7510.759.75
0513.05.025.08.0
067.015.025.04.0
077.015.019.010.0
080.07.00.044.0
0939.011.01.00.0
1050.00.00.01.0
110.01.00.050.0
121.00.01.049.0
1348.00.02.01.0
1412.55.532.50.5
154.2511.2510.2525.25
1612.07.029.03.0
PWM
ACGT
010.297-0.482-0.270.241
020.31-0.344-0.5740.31
030.227-0.965-0.2940.482
040.703-1.065-0.157-0.246
050.018-0.8310.638-0.424
06-0.5420.1520.638-1.014
07-0.5420.1520.375-0.223
08-2.637-0.542-2.6371.186
091.069-0.136-1.935-2.637
101.312-2.637-2.637-1.935
11-2.637-1.935-2.6371.312
12-1.935-2.637-1.9351.292
131.272-2.637-1.527-1.935
14-0.018-0.7510.891-2.226
15-0.965-0.116-0.2010.647
16-0.056-0.5420.781-1.238