Model info
| Transcription factor | VAX2 (GeneCards) | ||||||||
| Model | VAX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dndddvbTAATTARbR | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 51 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | VAX {3.1.2.22} | ||||||||
| HGNC | HGNC:12661 | ||||||||
| EntrezGene | GeneID:25806 (SSTAR profile) | ||||||||
| UniProt ID | VAX2_HUMAN | ||||||||
| UniProt AC | Q9UIW0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | VAX2 expression | ||||||||
| ReMap ChIP-seq dataset list | VAX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.5 | 7.5 | 9.5 | 16.5 |
| 02 | 17.75 | 8.75 | 6.75 | 17.75 |
| 03 | 16.25 | 4.25 | 9.25 | 21.25 |
| 04 | 26.75 | 3.75 | 10.75 | 9.75 |
| 05 | 13.0 | 5.0 | 25.0 | 8.0 |
| 06 | 7.0 | 15.0 | 25.0 | 4.0 |
| 07 | 7.0 | 15.0 | 19.0 | 10.0 |
| 08 | 0.0 | 7.0 | 0.0 | 44.0 |
| 09 | 39.0 | 11.0 | 1.0 | 0.0 |
| 10 | 50.0 | 0.0 | 0.0 | 1.0 |
| 11 | 0.0 | 1.0 | 0.0 | 50.0 |
| 12 | 1.0 | 0.0 | 1.0 | 49.0 |
| 13 | 48.0 | 0.0 | 2.0 | 1.0 |
| 14 | 12.5 | 5.5 | 32.5 | 0.5 |
| 15 | 4.25 | 11.25 | 10.25 | 25.25 |
| 16 | 12.0 | 7.0 | 29.0 | 3.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.297 | -0.482 | -0.27 | 0.241 |
| 02 | 0.31 | -0.344 | -0.574 | 0.31 |
| 03 | 0.227 | -0.965 | -0.294 | 0.482 |
| 04 | 0.703 | -1.065 | -0.157 | -0.246 |
| 05 | 0.018 | -0.831 | 0.638 | -0.424 |
| 06 | -0.542 | 0.152 | 0.638 | -1.014 |
| 07 | -0.542 | 0.152 | 0.375 | -0.223 |
| 08 | -2.637 | -0.542 | -2.637 | 1.186 |
| 09 | 1.069 | -0.136 | -1.935 | -2.637 |
| 10 | 1.312 | -2.637 | -2.637 | -1.935 |
| 11 | -2.637 | -1.935 | -2.637 | 1.312 |
| 12 | -1.935 | -2.637 | -1.935 | 1.292 |
| 13 | 1.272 | -2.637 | -1.527 | -1.935 |
| 14 | -0.018 | -0.751 | 0.891 | -2.226 |
| 15 | -0.965 | -0.116 | -0.201 | 0.647 |
| 16 | -0.056 | -0.542 | 0.781 | -1.238 |