We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorVDR
(GeneCards)
ModelVDR_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnvRGGKSAbhRRGKKYRn
Best auROC (human)0.95
Best auROC (mouse)0.939
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words419
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
HGNCHGNC:12679
EntrezGeneGeneID:7421
(SSTAR profile)
UniProt IDVDR_HUMAN
UniProt ACP11473
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.11951
0.0005 10.141960000000001
0.0001 14.331960000000002
GTEx tissue expression atlas VDR expression
ReMap ChIP-seq dataset list VDR datasets
Motifs in JASPAR
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0693.1 (Vdr; Mus musculus)
MA0693.2 (VDR; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0140.011.069.011.050.021.026.018.025.016.033.06.014.010.061.08.0
0251.03.075.00.042.04.010.02.091.03.094.01.015.00.028.00.0
0316.01.0179.03.07.00.01.02.026.03.0172.06.00.00.03.00.0
044.00.043.02.03.00.00.01.010.00.0268.077.01.00.09.01.0
050.02.02.014.00.00.00.00.06.023.049.0242.01.03.016.061.0
063.01.02.01.05.021.00.02.03.055.06.03.010.0209.069.029.0
0711.00.07.03.0248.05.019.014.052.06.016.03.027.02.05.01.0
0853.0120.0102.063.02.07.01.03.06.022.012.07.00.010.02.09.0
0920.013.05.023.041.028.09.081.017.032.028.040.013.015.022.032.0
103.07.080.01.031.010.039.08.08.010.045.01.010.019.0146.01.0
1123.01.028.00.034.00.010.02.0148.03.0153.06.02.00.09.00.0
120.00.0207.00.00.00.04.00.05.00.0191.04.00.00.08.00.0
130.00.05.00.00.00.00.00.02.07.0136.0265.00.00.03.01.0
141.00.01.00.02.02.01.02.020.019.029.076.013.019.031.0203.0
150.032.02.02.01.026.01.012.01.047.06.08.00.0193.016.072.0
160.00.02.00.0223.016.030.029.015.05.02.03.026.020.039.09.0
1754.060.068.082.011.012.03.015.013.011.012.037.08.012.06.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.419-0.8480.96-0.8480.64-0.217-0.007-0.368-0.046-0.4840.228-1.427-0.614-0.940.837-1.154
020.66-2.0621.043-4.2540.467-1.803-0.94-2.4141.235-2.0621.268-2.959-0.547-4.2540.066-4.254
03-0.484-2.9591.91-2.062-1.281-4.254-2.959-2.414-0.007-2.0621.87-1.427-4.254-4.254-2.062-4.254
04-1.803-4.2540.49-2.414-2.062-4.254-4.254-2.959-0.94-4.2542.3131.069-2.959-4.254-1.041-2.959
05-4.254-2.414-2.414-0.614-4.254-4.254-4.254-4.254-1.427-0.1280.622.211-2.959-2.062-0.4840.837
06-2.062-2.959-2.414-2.959-1.597-0.217-4.254-2.414-2.0620.735-1.427-2.062-0.942.0650.960.101
07-0.848-4.254-1.281-2.0622.235-1.597-0.315-0.6140.679-1.427-0.484-2.0620.03-2.414-1.597-2.959
080.6981.5111.3490.87-2.414-1.281-2.959-2.062-1.427-0.172-0.764-1.281-4.254-0.94-2.414-1.041
09-0.265-0.686-1.597-0.1280.4430.066-1.0411.12-0.4240.1980.0660.419-0.686-0.547-0.1720.198
10-2.062-1.2811.107-2.9590.166-0.940.394-1.154-1.154-0.940.535-2.959-0.94-0.3151.707-2.959
11-0.128-2.9590.066-4.2540.258-4.254-0.94-2.4141.72-2.0621.753-1.427-2.414-4.254-1.041-4.254
12-4.254-4.2542.055-4.254-4.254-4.254-1.803-4.254-1.597-4.2541.975-1.803-4.254-4.254-1.154-4.254
13-4.254-4.254-1.597-4.254-4.254-4.254-4.254-4.254-2.414-1.2811.6362.302-4.254-4.254-2.062-2.959
14-2.959-4.254-2.959-4.254-2.414-2.414-2.959-2.414-0.265-0.3150.1011.056-0.686-0.3150.1662.035
15-4.2540.198-2.414-2.414-2.959-0.007-2.959-0.764-2.9590.579-1.427-1.154-4.2541.985-0.4841.002
16-4.254-4.254-2.414-4.2542.129-0.4840.1340.101-0.547-1.597-2.414-2.062-0.007-0.2650.394-1.041
170.7160.8210.9451.132-0.848-0.764-2.062-0.547-0.686-0.848-0.7640.341-1.154-0.764-1.427-0.547