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Model info
Transcription factorVDR
(GeneCards)
ModelVDR_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnvRGGKSAbhRRGKKYRn
Best auROC (human)0.95
Best auROC (mouse)0.939
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words419
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
HGNCHGNC:12679
EntrezGeneGeneID:7421
(SSTAR profile)
UniProt IDVDR_HUMAN
UniProt ACP11473
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.11951
0.0005 10.141960000000001
0.0001 14.331960000000002
GTEx tissue expression atlas VDR expression
ReMap ChIP-seq dataset list VDR datasets
Motifs in JASPAR
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0693.1 (Vdr; Mus musculus)
MA0693.2 (VDR; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0140.011.069.011.050.021.026.018.025.016.033.06.014.010.061.08.0
0251.03.075.00.042.04.010.02.091.03.094.01.015.00.028.00.0
0316.01.0179.03.07.00.01.02.026.03.0172.06.00.00.03.00.0
044.00.043.02.03.00.00.01.010.00.0268.077.01.00.09.01.0
050.02.02.014.00.00.00.00.06.023.049.0242.01.03.016.061.0
063.01.02.01.05.021.00.02.03.055.06.03.010.0209.069.029.0
0711.00.07.03.0248.05.019.014.052.06.016.03.027.02.05.01.0
0853.0120.0102.063.02.07.01.03.06.022.012.07.00.010.02.09.0
0920.013.05.023.041.028.09.081.017.032.028.040.013.015.022.032.0
103.07.080.01.031.010.039.08.08.010.045.01.010.019.0146.01.0
1123.01.028.00.034.00.010.02.0148.03.0153.06.02.00.09.00.0
120.00.0207.00.00.00.04.00.05.00.0191.04.00.00.08.00.0
130.00.05.00.00.00.00.00.02.07.0136.0265.00.00.03.01.0
141.00.01.00.02.02.01.02.020.019.029.076.013.019.031.0203.0
150.032.02.02.01.026.01.012.01.047.06.08.00.0193.016.072.0
160.00.02.00.0223.016.030.029.015.05.02.03.026.020.039.09.0
1754.060.068.082.011.012.03.015.013.011.012.037.08.012.06.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.419-0.8480.96-0.8480.64-0.217-0.007-0.368-0.046-0.4840.228-1.427-0.614-0.940.837-1.154
020.66-2.0621.043-4.2540.467-1.803-0.94-2.4141.235-2.0621.268-2.959-0.547-4.2540.066-4.254
03-0.484-2.9591.91-2.062-1.281-4.254-2.959-2.414-0.007-2.0621.87-1.427-4.254-4.254-2.062-4.254
04-1.803-4.2540.49-2.414-2.062-4.254-4.254-2.959-0.94-4.2542.3131.069-2.959-4.254-1.041-2.959
05-4.254-2.414-2.414-0.614-4.254-4.254-4.254-4.254-1.427-0.1280.622.211-2.959-2.062-0.4840.837
06-2.062-2.959-2.414-2.959-1.597-0.217-4.254-2.414-2.0620.735-1.427-2.062-0.942.0650.960.101
07-0.848-4.254-1.281-2.0622.235-1.597-0.315-0.6140.679-1.427-0.484-2.0620.03-2.414-1.597-2.959
080.6981.5111.3490.87-2.414-1.281-2.959-2.062-1.427-0.172-0.764-1.281-4.254-0.94-2.414-1.041
09-0.265-0.686-1.597-0.1280.4430.066-1.0411.12-0.4240.1980.0660.419-0.686-0.547-0.1720.198
10-2.062-1.2811.107-2.9590.166-0.940.394-1.154-1.154-0.940.535-2.959-0.94-0.3151.707-2.959
11-0.128-2.9590.066-4.2540.258-4.254-0.94-2.4141.72-2.0621.753-1.427-2.414-4.254-1.041-4.254
12-4.254-4.2542.055-4.254-4.254-4.254-1.803-4.254-1.597-4.2541.975-1.803-4.254-4.254-1.154-4.254
13-4.254-4.254-1.597-4.254-4.254-4.254-4.254-4.254-2.414-1.2811.6362.302-4.254-4.254-2.062-2.959
14-2.959-4.254-2.959-4.254-2.414-2.414-2.959-2.414-0.265-0.3150.1011.056-0.686-0.3150.1662.035
15-4.2540.198-2.414-2.414-2.959-0.007-2.959-0.764-2.9590.579-1.427-1.154-4.2541.985-0.4841.002
16-4.254-4.254-2.414-4.2542.129-0.4840.1340.101-0.547-1.597-2.414-2.062-0.007-0.2650.394-1.041
170.7160.8210.9451.132-0.848-0.764-2.062-0.547-0.686-0.848-0.7640.341-1.154-0.764-1.427-0.547