We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorVDR
(GeneCards)
ModelVDR_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusvRGKKSAbhRRGKKYR
Best auROC (human)0.943
Best auROC (mouse)0.932
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
HGNCHGNC:12679
EntrezGeneGeneID:7421
(SSTAR profile)
UniProt IDVDR_HUMAN
UniProt ACP11473
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.22006
0.0005 5.18646
0.0001 7.182410000000001
GTEx tissue expression atlas VDR expression
ReMap ChIP-seq dataset list VDR datasets
Motifs in JASPAR
PCM
ACGT
01139.067.0230.064.0
02233.014.0246.07.0
0359.04.0422.015.0
0426.04.0381.089.0
055.062.093.0340.0
0625.0345.079.051.0
07406.07.054.033.0
0868.0169.0174.089.0
09104.0110.077.0209.0
1072.030.0386.012.0
11237.09.0248.06.0
124.02.0488.06.0
138.04.0184.0304.0
1439.040.098.0323.0
154.0384.030.082.0
16328.042.079.051.0
PWM
ACGT
010.105-0.6130.604-0.658
020.617-2.0960.671-2.694
03-0.737-3.1261.208-2.034
04-1.525-3.1261.106-0.335
05-2.961-0.689-0.2910.993
06-1.5611.007-0.452-0.879
071.17-2.694-0.823-1.298
08-0.5990.2980.327-0.335
09-0.181-0.126-0.4770.509
10-0.543-1.3891.119-2.234
110.634-2.4840.679-2.819
12-3.126-3.5731.353-2.819
13-2.584-3.1260.3830.881
14-1.138-1.114-0.240.942
15-3.1261.114-1.389-0.415
160.957-1.067-0.452-0.879