We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorVDR
(GeneCards)
ModelVDR_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensushRRGKTCAb
Best auROC (human)0.877
Best auROC (mouse)0.821
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
HGNCHGNC:12679
EntrezGeneGeneID:7421
(SSTAR profile)
UniProt IDVDR_HUMAN
UniProt ACP11473
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.171985
0.0005 6.153314999999999
0.0001 7.8810649999999995
GTEx tissue expression atlas VDR expression
ReMap ChIP-seq dataset list VDR datasets
Motifs in JASPAR
PCM
ACGT
01117.0100.079.0204.0
0291.017.0371.021.0
03207.01.0291.01.0
040.03.0497.00.0
054.00.0236.0260.0
063.05.043.0449.0
072.0489.04.05.0
08465.02.013.020.0
0951.0138.0185.0126.0
PWM
ACGT
01-0.065-0.22-0.4520.485
02-0.313-1.921.08-1.725
030.5-3.9030.838-3.903
04-4.4-3.3251.371-4.4
05-3.126-4.40.630.726
06-3.325-2.961-1.0441.27
07-3.5731.355-3.126-2.961
081.305-3.573-2.163-1.77
09-0.8790.0980.3880.008