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Model info
Transcription factorVdr
ModelVDR_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnvRGGKSAnnRRGKKCRn
Best auROC (human)0.953
Best auROC (mouse)0.939
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words499
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
MGIMGI:103076
EntrezGeneGeneID:22337
(SSTAR profile)
UniProt IDVDR_MOUSE
UniProt ACP48281
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.199760000000001
0.0005 10.18926
0.0001 14.33491
GTEx tissue expression atlas Vdr expression
Motifs in JASPAR
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0693.1 (Vdr; Mus musculus)
MA0693.2 (VDR; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0140.022.063.012.057.019.028.024.050.024.054.08.011.010.075.02.0
0260.02.093.03.049.05.020.01.094.03.0120.03.08.03.033.02.0
0316.05.0181.09.06.00.05.02.021.02.0234.09.01.00.07.01.0
042.00.041.01.02.00.04.01.012.04.0317.094.02.00.018.01.0
051.02.02.013.00.02.00.02.010.037.068.0265.01.013.020.063.0
062.05.05.00.011.038.03.02.011.068.08.03.07.0252.051.033.0
0713.01.014.03.0321.07.022.013.048.02.016.01.020.08.08.02.0
0858.0130.0140.074.01.011.04.02.06.019.022.013.00.09.03.07.0
0918.09.015.023.046.035.08.080.036.047.033.053.013.032.020.031.0
105.05.095.08.036.021.053.013.08.06.060.02.09.014.0158.06.0
1119.04.035.00.026.00.019.01.0190.09.0164.03.02.01.026.00.0
120.01.0235.01.03.00.011.00.04.01.0236.03.00.00.04.00.0
130.00.06.01.00.00.00.02.01.03.0179.0303.01.00.03.00.0
140.00.01.01.01.01.01.00.018.031.049.090.015.026.042.0223.0
150.029.03.02.01.048.00.09.01.076.02.014.03.0229.015.067.0
163.00.01.01.0283.018.052.029.012.02.06.00.027.019.030.016.0
1753.074.097.0101.06.015.03.015.012.032.020.025.09.012.08.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.246-0.3440.697-0.9360.597-0.488-0.106-0.2580.467-0.2580.544-1.326-1.02-1.1120.87-2.582
020.648-2.5821.084-2.2320.447-1.768-0.437-3.1241.095-2.2321.338-2.232-1.326-2.2320.056-2.582
03-0.656-1.7681.748-1.213-1.598-4.398-1.768-2.582-0.39-2.5822.005-1.213-3.124-4.398-1.452-3.124
04-2.582-4.3980.271-3.124-2.582-4.398-1.973-3.124-0.936-1.9732.3081.095-2.582-4.398-0.541-3.124
05-3.124-2.582-2.582-0.858-4.398-2.582-4.398-2.582-1.1120.1690.7732.129-3.124-0.858-0.4370.697
06-2.582-1.768-1.768-4.398-1.020.195-2.232-2.582-1.020.773-1.326-2.232-1.4522.0790.4870.056
07-0.858-3.124-0.786-2.2322.32-1.452-0.344-0.8580.427-2.582-0.656-3.124-0.437-1.326-1.326-2.582
080.6151.4181.4920.857-3.124-1.02-1.973-2.582-1.598-0.488-0.344-0.858-4.398-1.213-2.232-1.452
09-0.541-1.213-0.719-0.30.3850.114-1.3260.9340.1420.4060.0560.525-0.8580.025-0.437-0.006
10-1.768-1.7681.106-1.3260.142-0.390.525-0.858-1.326-1.5980.648-2.582-1.213-0.7861.613-1.598
11-0.488-1.9730.114-4.398-0.179-4.398-0.488-3.1241.797-1.2131.65-2.232-2.582-3.124-0.179-4.398
12-4.398-3.1242.009-3.124-2.232-4.398-1.02-4.398-1.973-3.1242.013-2.232-4.398-4.398-1.973-4.398
13-4.398-4.398-1.598-3.124-4.398-4.398-4.398-2.582-3.124-2.2321.7372.263-3.124-4.398-2.232-4.398
14-4.398-4.398-3.124-3.124-3.124-3.124-3.124-4.398-0.541-0.0060.4471.052-0.719-0.1790.2941.957
15-4.398-0.072-2.232-2.582-3.1240.427-4.398-1.213-3.1240.883-2.582-0.786-2.2321.983-0.7190.758
16-2.232-4.398-3.124-3.1242.194-0.5410.506-0.072-0.936-2.582-1.598-4.398-0.142-0.488-0.038-0.656
170.5250.8571.1261.167-1.598-0.719-2.232-0.719-0.9360.025-0.437-0.218-1.213-0.936-1.326-0.597