We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorVdr
ModelVDR_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnvRGGKSAnnRRGKKCRn
Best auROC (human)0.953
Best auROC (mouse)0.939
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)30
Aligned words499
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyVitamin D receptor (NR1I) {2.1.2.4}
MGIMGI:103076
EntrezGeneGeneID:22337
(SSTAR profile)
UniProt IDVDR_MOUSE
UniProt ACP48281
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.199760000000001
0.0005 10.18926
0.0001 14.33491
GTEx tissue expression atlas Vdr expression
Motifs in JASPAR
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0693.1 (Vdr; Mus musculus)
MA0693.2 (VDR; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0140.022.063.012.057.019.028.024.050.024.054.08.011.010.075.02.0
0260.02.093.03.049.05.020.01.094.03.0120.03.08.03.033.02.0
0316.05.0181.09.06.00.05.02.021.02.0234.09.01.00.07.01.0
042.00.041.01.02.00.04.01.012.04.0317.094.02.00.018.01.0
051.02.02.013.00.02.00.02.010.037.068.0265.01.013.020.063.0
062.05.05.00.011.038.03.02.011.068.08.03.07.0252.051.033.0
0713.01.014.03.0321.07.022.013.048.02.016.01.020.08.08.02.0
0858.0130.0140.074.01.011.04.02.06.019.022.013.00.09.03.07.0
0918.09.015.023.046.035.08.080.036.047.033.053.013.032.020.031.0
105.05.095.08.036.021.053.013.08.06.060.02.09.014.0158.06.0
1119.04.035.00.026.00.019.01.0190.09.0164.03.02.01.026.00.0
120.01.0235.01.03.00.011.00.04.01.0236.03.00.00.04.00.0
130.00.06.01.00.00.00.02.01.03.0179.0303.01.00.03.00.0
140.00.01.01.01.01.01.00.018.031.049.090.015.026.042.0223.0
150.029.03.02.01.048.00.09.01.076.02.014.03.0229.015.067.0
163.00.01.01.0283.018.052.029.012.02.06.00.027.019.030.016.0
1753.074.097.0101.06.015.03.015.012.032.020.025.09.012.08.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.246-0.3440.697-0.9360.597-0.488-0.106-0.2580.467-0.2580.544-1.326-1.02-1.1120.87-2.582
020.648-2.5821.084-2.2320.447-1.768-0.437-3.1241.095-2.2321.338-2.232-1.326-2.2320.056-2.582
03-0.656-1.7681.748-1.213-1.598-4.398-1.768-2.582-0.39-2.5822.005-1.213-3.124-4.398-1.452-3.124
04-2.582-4.3980.271-3.124-2.582-4.398-1.973-3.124-0.936-1.9732.3081.095-2.582-4.398-0.541-3.124
05-3.124-2.582-2.582-0.858-4.398-2.582-4.398-2.582-1.1120.1690.7732.129-3.124-0.858-0.4370.697
06-2.582-1.768-1.768-4.398-1.020.195-2.232-2.582-1.020.773-1.326-2.232-1.4522.0790.4870.056
07-0.858-3.124-0.786-2.2322.32-1.452-0.344-0.8580.427-2.582-0.656-3.124-0.437-1.326-1.326-2.582
080.6151.4181.4920.857-3.124-1.02-1.973-2.582-1.598-0.488-0.344-0.858-4.398-1.213-2.232-1.452
09-0.541-1.213-0.719-0.30.3850.114-1.3260.9340.1420.4060.0560.525-0.8580.025-0.437-0.006
10-1.768-1.7681.106-1.3260.142-0.390.525-0.858-1.326-1.5980.648-2.582-1.213-0.7861.613-1.598
11-0.488-1.9730.114-4.398-0.179-4.398-0.488-3.1241.797-1.2131.65-2.232-2.582-3.124-0.179-4.398
12-4.398-3.1242.009-3.124-2.232-4.398-1.02-4.398-1.973-3.1242.013-2.232-4.398-4.398-1.973-4.398
13-4.398-4.398-1.598-3.124-4.398-4.398-4.398-2.582-3.124-2.2321.7372.263-3.124-4.398-2.232-4.398
14-4.398-4.398-3.124-3.124-3.124-3.124-3.124-4.398-0.541-0.0060.4471.052-0.719-0.1790.2941.957
15-4.398-0.072-2.232-2.582-3.1240.427-4.398-1.213-3.1240.883-2.582-0.786-2.2321.983-0.7190.758
16-2.232-4.398-3.124-3.1242.194-0.5410.506-0.072-0.936-2.582-1.598-4.398-0.142-0.488-0.038-0.656
170.5250.8571.1261.167-1.598-0.719-2.232-0.719-0.9360.025-0.437-0.218-1.213-0.936-1.326-0.597