We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorVSX1
(GeneCards)
ModelVSX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length14
Quality
D
Motif rank
0
ConsensusTAATTARhhhhhhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6598
TF familyPaired-related HD factors {3.1.3}
TF subfamilyVSX {3.1.3.28}
HGNCHGNC:12723
EntrezGeneGeneID:30813
(SSTAR profile)
UniProt IDVSX1_HUMAN
UniProt ACQ9NZR4
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.35886
0.0005 6.32201
0.0001 8.409415
GTEx tissue expression atlas VSX1 expression
ReMap ChIP-seq dataset list VSX1 datasets
Motifs in JASPAR
PCM
ACGT
01172.076208.051118.4995969.373
026205.83989.59594.83877.729
036276.57360.43972.88258.106
0444.32859.7877.6676286.225
0532.64945.39388.2396301.719
064971.96992.6371355.86247.532
071629.972916.253740.676181.102
081036.6823664.984761.2651005.069
091397.2821784.369720.1592566.189
102635.6541104.75519.5752208.022
112911.869776.207489.522290.405
122261.829663.274443.2013099.697
132691.274623.034386.4842767.209
142566.365581.693681.7012638.241
PWM
ACGT
01-2.229-2.041-2.5961.305
021.344-2.87-2.815-3.009
031.355-3.252-3.071-3.29
04-3.55-3.263-3.0091.357
05-3.839-3.527-2.8851.359
061.122-2.838-0.176-3.483
070.008-0.5670.838-2.179
08-0.4440.817-0.752-0.475
09-0.1460.098-0.8070.461
100.488-0.38-1.1320.311
110.588-0.732-1.1920.348
120.335-0.889-1.2910.65
130.509-0.952-1.4270.537
140.461-1.02-0.8620.489