Model info
| Transcription factor | VSX1 (GeneCards) | ||||||||
| Model | VSX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TAATTARhhhhhhd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 6598 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | VSX {3.1.3.28} | ||||||||
| HGNC | HGNC:12723 | ||||||||
| EntrezGene | GeneID:30813 (SSTAR profile) | ||||||||
| UniProt ID | VSX1_HUMAN | ||||||||
| UniProt AC | Q9NZR4 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | VSX1 expression | ||||||||
| ReMap ChIP-seq dataset list | VSX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 172.076 | 208.051 | 118.499 | 5969.373 |
| 02 | 6205.839 | 89.595 | 94.838 | 77.729 |
| 03 | 6276.573 | 60.439 | 72.882 | 58.106 |
| 04 | 44.328 | 59.78 | 77.667 | 6286.225 |
| 05 | 32.649 | 45.393 | 88.239 | 6301.719 |
| 06 | 4971.969 | 92.637 | 1355.862 | 47.532 |
| 07 | 1629.972 | 916.25 | 3740.676 | 181.102 |
| 08 | 1036.682 | 3664.984 | 761.265 | 1005.069 |
| 09 | 1397.282 | 1784.369 | 720.159 | 2566.189 |
| 10 | 2635.654 | 1104.75 | 519.575 | 2208.022 |
| 11 | 2911.869 | 776.207 | 489.52 | 2290.405 |
| 12 | 2261.829 | 663.274 | 443.201 | 3099.697 |
| 13 | 2691.274 | 623.034 | 386.484 | 2767.209 |
| 14 | 2566.365 | 581.693 | 681.701 | 2638.241 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.229 | -2.041 | -2.596 | 1.305 |
| 02 | 1.344 | -2.87 | -2.815 | -3.009 |
| 03 | 1.355 | -3.252 | -3.071 | -3.29 |
| 04 | -3.55 | -3.263 | -3.009 | 1.357 |
| 05 | -3.839 | -3.527 | -2.885 | 1.359 |
| 06 | 1.122 | -2.838 | -0.176 | -3.483 |
| 07 | 0.008 | -0.567 | 0.838 | -2.179 |
| 08 | -0.444 | 0.817 | -0.752 | -0.475 |
| 09 | -0.146 | 0.098 | -0.807 | 0.461 |
| 10 | 0.488 | -0.38 | -1.132 | 0.311 |
| 11 | 0.588 | -0.732 | -1.192 | 0.348 |
| 12 | 0.335 | -0.889 | -1.291 | 0.65 |
| 13 | 0.509 | -0.952 | -1.427 | 0.537 |
| 14 | 0.461 | -1.02 | -0.862 | 0.489 |