Transcription factor | VSX2 (GeneCards) | ||||||||
Model | VSX2_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | hTAATTAGCYdn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.996 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 504 | ||||||||
TF family | Paired-related HD factors {3.1.3} | ||||||||
TF subfamily | VSX {3.1.3.28} | ||||||||
HGNC | HGNC:1975 | ||||||||
EntrezGene | GeneID:338917 (SSTAR profile) | ||||||||
UniProt ID | VSX2_HUMAN | ||||||||
UniProt AC | P58304 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | VSX2 expression | ||||||||
ReMap ChIP-seq dataset list | VSX2 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 60.0 | 194.0 | 41.0 | 205.0 |
02 | 7.0 | 2.0 | 2.0 | 489.0 |
03 | 489.0 | 5.0 | 4.0 | 2.0 |
04 | 498.0 | 2.0 | 0.0 | 0.0 |
05 | 0.0 | 0.0 | 2.0 | 498.0 |
06 | 0.0 | 1.0 | 0.0 | 499.0 |
07 | 496.0 | 0.0 | 4.0 | 0.0 |
08 | 7.0 | 4.0 | 489.0 | 0.0 |
09 | 0.0 | 497.0 | 1.0 | 2.0 |
10 | 16.0 | 181.0 | 1.0 | 302.0 |
11 | 108.0 | 74.0 | 80.0 | 238.0 |
12 | 159.0 | 170.0 | 95.0 | 76.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.721 | 0.435 | -1.09 | 0.49 |
02 | -2.694 | -3.573 | -3.573 | 1.355 |
03 | 1.355 | -2.961 | -3.126 | -3.573 |
04 | 1.373 | -3.573 | -4.4 | -4.4 |
05 | -4.4 | -4.4 | -3.573 | 1.373 |
06 | -4.4 | -3.903 | -4.4 | 1.375 |
07 | 1.369 | -4.4 | -3.126 | -4.4 |
08 | -2.694 | -3.126 | 1.355 | -4.4 |
09 | -4.4 | 1.371 | -3.903 | -3.573 |
10 | -1.975 | 0.366 | -3.903 | 0.875 |
11 | -0.144 | -0.516 | -0.439 | 0.638 |
12 | 0.238 | 0.304 | -0.271 | -0.49 |