Check the newest release v12
Model info
Transcription factorVsx2
ModelVSX2_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensushTAATTAGCYdn
Best auROC (human)
Best auROC (mouse)0.996
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words504
TF familyPaired-related HD factors {3.1.3}
TF subfamilyVSX {3.1.3.28}
MGIMGI:88401
EntrezGeneGeneID:12677
(SSTAR profile)
UniProt IDVSX2_MOUSE
UniProt ACQ61412
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.06689
0.0005 3.099745
0.0001 6.7408
GTEx tissue expression atlas Vsx2 expression
Motifs in JASPAR
MA0726.1 (VSX2; Homo sapiens)
PCM
ACGT
0160.0194.041.0205.0
027.02.02.0489.0
03489.05.04.02.0
04498.02.00.00.0
050.00.02.0498.0
060.01.00.0499.0
07496.00.04.00.0
087.04.0489.00.0
090.0497.01.02.0
1016.0181.01.0302.0
11108.074.080.0238.0
12159.0170.095.076.0
PWM
ACGT
01-0.7210.435-1.090.49
02-2.694-3.573-3.5731.355
031.355-2.961-3.126-3.573
041.373-3.573-4.4-4.4
05-4.4-4.4-3.5731.373
06-4.4-3.903-4.41.375
071.369-4.4-3.126-4.4
08-2.694-3.1261.355-4.4
09-4.41.371-3.903-3.573
10-1.9750.366-3.9030.875
11-0.144-0.516-0.4390.638
120.2380.304-0.271-0.49