We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorXBP1
(GeneCards)
ModelXBP1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
D
Motif rank
0
ConsensusRvdSASGTGKM
Best auROC (human)0.795
Best auROC (mouse)
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)
Aligned words502
TF familyXBP-1-related factors {1.1.5}
TF subfamilyXBP-1 {1.1.5.0.1}
HGNCHGNC:12801
EntrezGeneGeneID:7494
(SSTAR profile)
UniProt IDXBP1_HUMAN
UniProt ACP17861
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.7550099999999995
0.0005 4.523565
0.0001 6.108625
GTEx tissue expression atlas XBP1 expression
ReMap ChIP-seq dataset list XBP1 datasets
Motifs in JASPAR
MA0844.1 (XBP1; Homo sapiens)
PCM
ACGT
0177.038.0334.051.0
0287.0217.0175.021.0
0399.054.0120.0227.0
0435.048.0387.030.0
05439.011.032.018.0
0649.0360.051.040.0
078.010.0464.018.0
0811.055.012.0422.0
0916.012.0461.011.0
1039.09.0376.076.0
1172.0355.048.025.0
PWM
ACGT
01-0.477-1.1630.975-0.879
02-0.3570.5460.333-1.725
03-0.23-0.823-0.040.591
04-1.242-0.9381.122-1.389
051.247-2.311-1.328-1.868
06-0.9181.05-0.879-1.114
07-2.584-2.3941.303-1.868
08-2.311-0.805-2.2341.208
09-1.975-2.2341.296-2.311
10-1.138-2.4841.093-0.49
11-0.5431.036-0.938-1.561