Model info
| Transcription factor | XBP1 (GeneCards) | ||||||||
| Model | XBP1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RvdSASGTGKM | ||||||||
| Best auROC (human) | 0.795 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 502 | ||||||||
| TF family | XBP-1-related factors {1.1.5} | ||||||||
| TF subfamily | XBP-1 {1.1.5.0.1} | ||||||||
| HGNC | HGNC:12801 | ||||||||
| EntrezGene | GeneID:7494 (SSTAR profile) | ||||||||
| UniProt ID | XBP1_HUMAN | ||||||||
| UniProt AC | P17861 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | XBP1 expression | ||||||||
| ReMap ChIP-seq dataset list | XBP1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 77.0 | 38.0 | 334.0 | 51.0 |
| 02 | 87.0 | 217.0 | 175.0 | 21.0 |
| 03 | 99.0 | 54.0 | 120.0 | 227.0 |
| 04 | 35.0 | 48.0 | 387.0 | 30.0 |
| 05 | 439.0 | 11.0 | 32.0 | 18.0 |
| 06 | 49.0 | 360.0 | 51.0 | 40.0 |
| 07 | 8.0 | 10.0 | 464.0 | 18.0 |
| 08 | 11.0 | 55.0 | 12.0 | 422.0 |
| 09 | 16.0 | 12.0 | 461.0 | 11.0 |
| 10 | 39.0 | 9.0 | 376.0 | 76.0 |
| 11 | 72.0 | 355.0 | 48.0 | 25.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.477 | -1.163 | 0.975 | -0.879 |
| 02 | -0.357 | 0.546 | 0.333 | -1.725 |
| 03 | -0.23 | -0.823 | -0.04 | 0.591 |
| 04 | -1.242 | -0.938 | 1.122 | -1.389 |
| 05 | 1.247 | -2.311 | -1.328 | -1.868 |
| 06 | -0.918 | 1.05 | -0.879 | -1.114 |
| 07 | -2.584 | -2.394 | 1.303 | -1.868 |
| 08 | -2.311 | -0.805 | -2.234 | 1.208 |
| 09 | -1.975 | -2.234 | 1.296 | -2.311 |
| 10 | -1.138 | -2.484 | 1.093 | -0.49 |
| 11 | -0.543 | 1.036 | -0.938 | -1.561 |