Model info
| Transcription factor | Xbp1 | ||||||||
| Model | XBP1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | GACGTGTMhhWd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1910 | ||||||||
| TF family | XBP-1-related factors {1.1.5} | ||||||||
| TF subfamily | XBP-1 {1.1.5.0.1} | ||||||||
| MGI | MGI:98970 | ||||||||
| EntrezGene | GeneID:22433 (SSTAR profile) | ||||||||
| UniProt ID | XBP1_MOUSE | ||||||||
| UniProt AC | O35426 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Xbp1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 0.0 | 1538.367 | 38.26 |
| 02 | 1576.627 | 0.0 | 0.0 | 0.0 |
| 03 | 0.0 | 1576.627 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 1576.627 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1576.627 |
| 06 | 0.49 | 0.0 | 1573.987 | 2.15 |
| 07 | 0.0 | 0.0 | 686.26 | 890.367 |
| 08 | 256.122 | 1192.565 | 33.465 | 94.475 |
| 09 | 710.948 | 480.847 | 184.859 | 199.973 |
| 10 | 364.63 | 346.114 | 126.736 | 739.147 |
| 11 | 530.522 | 49.133 | 35.414 | 961.558 |
| 12 | 609.522 | 176.018 | 240.476 | 550.61 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -5.371 | -5.371 | 1.358 | -2.29 |
| 02 | 1.383 | -5.371 | -5.371 | -5.371 |
| 03 | -5.371 | 1.383 | -5.371 | -5.371 |
| 04 | -5.371 | -5.371 | 1.383 | -5.371 |
| 05 | -5.371 | -5.371 | -5.371 | 1.383 |
| 06 | -5.135 | -5.371 | 1.381 | -4.597 |
| 07 | -5.371 | -5.371 | 0.553 | 0.812 |
| 08 | -0.429 | 1.104 | -2.417 | -1.414 |
| 09 | 0.588 | 0.198 | -0.752 | -0.674 |
| 10 | -0.077 | -0.129 | -1.125 | 0.627 |
| 11 | 0.296 | -2.05 | -2.364 | 0.889 |
| 12 | 0.434 | -0.8 | -0.491 | 0.333 |