Model info
| Transcription factor | ZBED1 (GeneCards) | ||||||||
| Model | ZBED1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YATGTCGCGATAb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 4698 | ||||||||
| TF family | BED zinc finger factors {2.3.5} | ||||||||
| TF subfamily | ZBED1 (ALTE, DREF, TRAMP) {2.3.5.0.1} | ||||||||
| HGNC | HGNC:447 | ||||||||
| EntrezGene | GeneID:9189 (SSTAR profile) | ||||||||
| UniProt ID | ZBED1_HUMAN | ||||||||
| UniProt AC | O96006 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZBED1 expression | ||||||||
| ReMap ChIP-seq dataset list | ZBED1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 198.0 | 1438.0 | 93.0 | 2676.0 |
| 02 | 4297.5 | 56.5 | 39.5 | 11.5 |
| 03 | 1.5 | 0.5 | 0.5 | 4402.5 |
| 04 | 1392.0 | 0.0 | 3013.0 | 0.0 |
| 05 | 0.0 | 1.0 | 0.0 | 4404.0 |
| 06 | 0.0 | 4405.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 4405.0 | 0.0 |
| 08 | 0.0 | 4287.0 | 1.0 | 117.0 |
| 09 | 0.0 | 0.0 | 4405.0 | 0.0 |
| 10 | 4405.0 | 0.0 | 0.0 | 0.0 |
| 11 | 10.0 | 1601.0 | 10.0 | 2784.0 |
| 12 | 4329.75 | 14.75 | 13.75 | 46.75 |
| 13 | 257.5 | 545.5 | 1358.5 | 2243.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.707 | 0.266 | -2.451 | 0.887 |
| 02 | 1.36 | -2.935 | -3.278 | -4.396 |
| 03 | -5.726 | -6.052 | -6.052 | 1.384 |
| 04 | 0.234 | -6.265 | 1.005 | -6.265 |
| 05 | -6.265 | -5.875 | -6.265 | 1.385 |
| 06 | -6.265 | 1.385 | -6.265 | -6.265 |
| 07 | -6.265 | -6.265 | 1.385 | -6.265 |
| 08 | -6.265 | 1.358 | -5.875 | -2.226 |
| 09 | -6.265 | -6.265 | 1.385 | -6.265 |
| 10 | 1.385 | -6.265 | -6.265 | -6.265 |
| 11 | -4.513 | 0.374 | -4.513 | 0.926 |
| 12 | 1.368 | -4.182 | -4.243 | -3.117 |
| 13 | -1.447 | -0.701 | 0.21 | 0.711 |