We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZBED1
(GeneCards)
ModelZBED1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusYATGTCGCGATAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words4698
TF familyBED zinc finger factors {2.3.5}
TF subfamilyZBED1 (ALTE, DREF, TRAMP) {2.3.5.0.1}
HGNCHGNC:447
EntrezGeneGeneID:9189
(SSTAR profile)
UniProt IDZBED1_HUMAN
UniProt ACO96006
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -8.627334999999999
0.0005 -6.8390249999999995
0.0001 -2.733245
GTEx tissue expression atlas ZBED1 expression
ReMap ChIP-seq dataset list ZBED1 datasets
Motifs in JASPAR
MA0749.1 (ZBED1; Homo sapiens)
PCM
ACGT
01198.01438.093.02676.0
024297.556.539.511.5
031.50.50.54402.5
041392.00.03013.00.0
050.01.00.04404.0
060.04405.00.00.0
070.00.04405.00.0
080.04287.01.0117.0
090.00.04405.00.0
104405.00.00.00.0
1110.01601.010.02784.0
124329.7514.7513.7546.75
13257.5545.51358.52243.5
PWM
ACGT
01-1.7070.266-2.4510.887
021.36-2.935-3.278-4.396
03-5.726-6.052-6.0521.384
040.234-6.2651.005-6.265
05-6.265-5.875-6.2651.385
06-6.2651.385-6.265-6.265
07-6.265-6.2651.385-6.265
08-6.2651.358-5.875-2.226
09-6.265-6.2651.385-6.265
101.385-6.265-6.265-6.265
11-4.5130.374-4.5130.926
121.368-4.182-4.243-3.117
13-1.447-0.7010.210.711