ZBT48_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

ZBTB48
(GeneCards)

Model

ZBT48_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

12

Quality

C

Motif rank

0

Consensus

YhAGGGAbYvdv

Best auROC (human)

0.885

Best auROC (mouse)

Peak sets in benchmark (human)

2

Peak sets in benchmark (mouse)

Aligned words

501

TF family

More than 3 adjacent zinc finger factors {2.3.3}

TF subfamily

unclassified {2.3.3.0}

HGNC

EntrezGene

GeneID:3104
(SSTAR profile)

UniProt ID

UniProt AC

P10074
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.830365
0.0005	5.851514999999999
0.0001	7.55037

GTEx tissue expression atlas

ZBTB48 expression

ReMap ChIP-seq dataset list

ZBTB48 datasets

Motifs in JASPAR

PCM

	A	C	G	T
01	16.0	190.0	52.0	242.0
02	146.0	150.0	11.0	193.0
03	487.0	0.0	7.0	6.0
04	0.0	0.0	500.0	0.0
05	4.0	1.0	495.0	0.0
06	5.0	7.0	488.0	0.0
07	403.0	20.0	71.0	6.0
08	51.0	253.0	108.0	88.0
09	69.0	305.0	30.0	96.0
10	128.0	81.0	237.0	54.0
11	71.0	48.0	136.0	245.0
12	91.0	157.0	196.0	56.0

PWM

	A	C	G	T
01	-1.975	0.415	-0.86	0.655
02	0.154	0.18	-2.311	0.43
03	1.351	-4.4	-2.694	-2.819
04	-4.4	-4.4	1.377	-4.4
05	-3.126	-3.903	1.367	-4.4
06	-2.961	-2.694	1.353	-4.4
07	1.162	-1.77	-0.556	-2.819
08	-0.879	0.699	-0.144	-0.346
09	-0.584	0.885	-1.389	-0.26
10	0.023	-0.427	0.634	-0.823
11	-0.556	-0.938	0.083	0.667
12	-0.313	0.225	0.445	-0.788