We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZEB1
(GeneCards)
ModelZEB1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusbvCAGGTRdR
Best auROC (human)0.938
Best auROC (mouse)
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)
Aligned words500
TF familyHD-ZF factors {3.1.8}
TF subfamilyZEB {3.1.8.3}
HGNCHGNC:11642
EntrezGeneGeneID:6935
(SSTAR profile)
UniProt IDZEB1_HUMAN
UniProt ACP37275
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.02046
0.0005 5.91942
0.0001 7.536505
GTEx tissue expression atlas ZEB1 expression
ReMap ChIP-seq dataset list ZEB1 datasets
Motifs in JASPAR
PCM
ACGT
0125.0137.0218.0120.0
02181.0170.0114.035.0
0387.0406.02.05.0
04487.01.01.011.0
0511.02.0476.011.0
065.02.0484.09.0
0773.07.03.0417.0
08157.03.0336.04.0
09220.040.072.0168.0
10104.069.0301.026.0
PWM
ACGT
01-1.5610.0910.551-0.04
020.3660.304-0.091-1.242
03-0.3571.17-3.573-2.961
041.351-3.903-3.903-2.311
05-2.311-3.5731.328-2.311
06-2.961-3.5731.345-2.484
07-0.529-2.694-3.3251.196
080.225-3.3250.981-3.126
090.56-1.114-0.5430.293
10-0.181-0.5840.872-1.525