Model info
| Transcription factor | ZFP28 (GeneCards) | ||||||||
| Model | ZFP28_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YTCYRTTTCYTCWKRWKTSA | ||||||||
| Best auROC (human) | 0.993 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 417 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:17801 | ||||||||
| EntrezGene | GeneID:140612 (SSTAR profile) | ||||||||
| UniProt ID | ZFP28_HUMAN | ||||||||
| UniProt AC | Q8NHY6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZFP28 expression | ||||||||
| ReMap ChIP-seq dataset list | ZFP28 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 42.0 | 79.0 | 25.0 | 271.0 |
| 02 | 5.0 | 4.0 | 1.0 | 407.0 |
| 03 | 1.0 | 363.0 | 0.0 | 53.0 |
| 04 | 37.0 | 67.0 | 9.0 | 304.0 |
| 05 | 266.0 | 30.0 | 87.0 | 34.0 |
| 06 | 4.0 | 44.0 | 1.0 | 368.0 |
| 07 | 5.0 | 33.0 | 5.0 | 374.0 |
| 08 | 1.0 | 10.0 | 1.0 | 405.0 |
| 09 | 3.0 | 376.0 | 5.0 | 33.0 |
| 10 | 43.0 | 79.0 | 1.0 | 294.0 |
| 11 | 14.0 | 10.0 | 2.0 | 391.0 |
| 12 | 3.0 | 336.0 | 6.0 | 72.0 |
| 13 | 50.0 | 40.0 | 14.0 | 313.0 |
| 14 | 26.0 | 21.0 | 110.0 | 260.0 |
| 15 | 73.0 | 21.0 | 267.0 | 56.0 |
| 16 | 151.0 | 9.0 | 66.0 | 191.0 |
| 17 | 35.0 | 18.0 | 328.0 | 36.0 |
| 18 | 20.0 | 17.0 | 22.0 | 358.0 |
| 19 | 35.0 | 283.0 | 65.0 | 34.0 |
| 20 | 359.0 | 13.0 | 14.0 | 31.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.888 | -0.273 | -1.384 | 0.947 |
| 02 | -2.788 | -2.955 | -3.742 | 1.351 |
| 03 | -3.742 | 1.237 | -4.25 | -0.663 |
| 04 | -1.01 | -0.434 | -2.309 | 1.061 |
| 05 | 0.928 | -1.211 | -0.178 | -1.091 |
| 06 | -2.955 | -0.843 | -3.742 | 1.251 |
| 07 | -2.788 | -1.12 | -2.788 | 1.267 |
| 08 | -3.742 | -2.218 | -3.742 | 1.346 |
| 09 | -3.155 | 1.272 | -2.788 | -1.12 |
| 10 | -0.865 | -0.273 | -3.742 | 1.028 |
| 11 | -1.92 | -2.218 | -3.406 | 1.311 |
| 12 | -3.155 | 1.16 | -2.645 | -0.364 |
| 13 | -0.719 | -0.935 | -1.92 | 1.09 |
| 14 | -1.347 | -1.547 | 0.053 | 0.905 |
| 15 | -0.35 | -1.547 | 0.932 | -0.609 |
| 16 | 0.366 | -2.309 | -0.449 | 0.599 |
| 17 | -1.064 | -1.69 | 1.136 | -1.037 |
| 18 | -1.593 | -1.743 | -1.504 | 1.224 |
| 19 | -1.064 | 0.99 | -0.464 | -1.091 |
| 20 | 1.226 | -1.986 | -1.92 | -1.18 |