We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZFP42
(GeneCards)
ModelZFP42_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusvRShGCCATYTY
Best auROC (human)0.909
Best auROC (mouse)0.8
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)2
Aligned words500
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyYY1-like factors {2.3.3.9}
HGNCHGNC:30949
EntrezGeneGeneID:132625
(SSTAR profile)
UniProt IDZFP42_HUMAN
UniProt ACQ96MM3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.508265
0.0005 5.52527
0.0001 7.5702549999999995
GTEx tissue expression atlas ZFP42 expression
ReMap ChIP-seq dataset list ZFP42 datasets
Motifs in JASPAR
PCM
ACGT
01100.069.0272.059.0
0261.027.0378.034.0
0371.0295.098.036.0
04248.0164.043.045.0
0511.014.0394.081.0
0640.0442.010.08.0
070.0491.04.05.0
08495.04.01.00.0
091.04.08.0487.0
1021.0127.048.0304.0
1133.034.029.0404.0
1214.0101.010.0375.0
PWM
ACGT
01-0.22-0.5840.771-0.737
02-0.705-1.4891.098-1.27
03-0.5560.852-0.24-1.215
040.6790.269-1.044-1.0
05-2.311-2.0961.14-0.427
06-1.1141.254-2.394-2.584
07-4.41.359-3.126-2.961
081.367-3.126-3.903-4.4
09-3.903-3.126-2.5841.351
10-1.7250.016-0.9380.881
11-1.298-1.27-1.4211.165
12-2.096-0.21-2.3941.09