Model info
| Transcription factor | ZFP42 (GeneCards) | ||||||||
| Model | ZFP42_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRShGCCATYTY | ||||||||
| Best auROC (human) | 0.909 | ||||||||
| Best auROC (mouse) | 0.8 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | YY1-like factors {2.3.3.9} | ||||||||
| HGNC | HGNC:30949 | ||||||||
| EntrezGene | GeneID:132625 (SSTAR profile) | ||||||||
| UniProt ID | ZFP42_HUMAN | ||||||||
| UniProt AC | Q96MM3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZFP42 expression | ||||||||
| ReMap ChIP-seq dataset list | ZFP42 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 100.0 | 69.0 | 272.0 | 59.0 |
| 02 | 61.0 | 27.0 | 378.0 | 34.0 |
| 03 | 71.0 | 295.0 | 98.0 | 36.0 |
| 04 | 248.0 | 164.0 | 43.0 | 45.0 |
| 05 | 11.0 | 14.0 | 394.0 | 81.0 |
| 06 | 40.0 | 442.0 | 10.0 | 8.0 |
| 07 | 0.0 | 491.0 | 4.0 | 5.0 |
| 08 | 495.0 | 4.0 | 1.0 | 0.0 |
| 09 | 1.0 | 4.0 | 8.0 | 487.0 |
| 10 | 21.0 | 127.0 | 48.0 | 304.0 |
| 11 | 33.0 | 34.0 | 29.0 | 404.0 |
| 12 | 14.0 | 101.0 | 10.0 | 375.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.22 | -0.584 | 0.771 | -0.737 |
| 02 | -0.705 | -1.489 | 1.098 | -1.27 |
| 03 | -0.556 | 0.852 | -0.24 | -1.215 |
| 04 | 0.679 | 0.269 | -1.044 | -1.0 |
| 05 | -2.311 | -2.096 | 1.14 | -0.427 |
| 06 | -1.114 | 1.254 | -2.394 | -2.584 |
| 07 | -4.4 | 1.359 | -3.126 | -2.961 |
| 08 | 1.367 | -3.126 | -3.903 | -4.4 |
| 09 | -3.903 | -3.126 | -2.584 | 1.351 |
| 10 | -1.725 | 0.016 | -0.938 | 0.881 |
| 11 | -1.298 | -1.27 | -1.421 | 1.165 |
| 12 | -2.096 | -0.21 | -2.394 | 1.09 |