Check the newest release v13
Model info
Transcription factorZIC2
(GeneCards)
ModelZIC2_HUMAN.H11DI.0.D
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
D
Motif rank
0
ConsensusndvhYhCCTGCKGdGhn
Best auROC (human)0.535
Best auROC (mouse)0.987
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)4
Aligned words520
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
HGNCHGNC:12873
EntrezGeneGeneID:7546
(SSTAR profile)
UniProt IDZIC2_HUMAN
UniProt ACO95409
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.871560000000001
0.0005 9.08106
0.0001 13.66811
GTEx tissue expression atlas ZIC2 expression
ReMap ChIP-seq dataset list ZIC2 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0136.07.092.010.021.025.023.084.025.020.039.011.06.016.058.027.0
0230.08.043.07.034.013.012.09.054.053.099.06.011.013.0103.05.0
0322.065.022.020.017.049.05.016.052.0162.013.030.02.016.04.05.0
0411.060.07.015.023.0130.07.0132.06.021.02.015.04.039.07.021.0
056.022.08.08.046.0110.010.084.01.08.01.013.060.049.029.045.0
060.0112.01.00.00.0188.01.00.00.048.00.00.00.0149.01.00.0
070.00.00.00.039.0450.00.08.00.03.00.00.00.00.00.00.0
084.03.00.032.09.072.01.0371.00.00.00.00.00.00.00.08.0
091.00.012.00.020.01.054.00.01.00.00.00.016.011.0384.00.0
101.032.04.01.00.012.00.00.04.0367.043.036.00.00.00.00.0
111.01.03.00.033.011.014.0353.09.02.015.021.02.00.026.09.0
121.00.044.00.00.00.014.00.01.00.057.00.07.01.0373.02.0
137.00.01.01.00.00.00.01.0189.035.0112.0152.00.00.02.00.0
140.06.0182.08.01.04.014.016.01.012.094.08.01.010.0121.022.0
150.02.01.00.014.01.03.014.0202.0111.037.061.012.022.08.012.0
1642.030.0123.033.032.032.016.056.03.016.019.011.05.025.025.032.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.14-1.4541.072-1.114-0.392-0.22-0.3020.981-0.22-0.4390.219-1.022-1.6-0.6580.613-0.144
02-0.04-1.3280.316-1.4540.083-0.86-0.938-1.2150.5420.5231.145-1.6-1.022-0.861.184-1.77
03-0.3460.726-0.346-0.439-0.5990.445-1.77-0.6580.5041.636-0.86-0.04-2.584-0.658-1.975-1.77
04-1.0220.646-1.454-0.721-0.3021.416-1.4541.431-1.6-0.392-2.584-0.721-1.9750.219-1.454-0.392
05-1.6-0.346-1.328-1.3280.3831.25-1.1140.981-3.126-1.328-3.126-0.860.6460.445-0.0740.361
06-4.41.268-3.126-4.4-4.41.784-3.126-4.4-4.40.425-4.4-4.4-4.41.552-3.126-4.4
07-4.4-4.4-4.4-4.40.2192.656-4.4-1.328-4.4-2.234-4.4-4.4-4.4-4.4-4.4-4.4
08-1.975-2.234-4.40.023-1.2150.828-3.1262.463-4.4-4.4-4.4-4.4-4.4-4.4-4.4-1.328
09-3.126-4.4-0.938-4.4-0.439-3.1260.542-4.4-3.126-4.4-4.4-4.4-0.658-1.0222.497-4.4
10-3.1260.023-1.975-3.126-4.4-0.938-4.4-4.4-1.9752.4520.3160.14-4.4-4.4-4.4-4.4
11-3.126-3.126-2.234-4.40.054-1.022-0.7882.413-1.215-2.584-0.721-0.392-2.584-4.4-0.181-1.215
12-3.126-4.40.339-4.4-4.4-4.4-0.788-4.4-3.126-4.40.595-4.4-1.454-3.1262.468-2.584
13-1.454-4.4-3.126-3.126-4.4-4.4-4.4-3.1261.7890.1121.2681.572-4.4-4.4-2.584-4.4
14-4.4-1.61.752-1.328-3.126-1.975-0.788-0.658-3.126-0.9381.093-1.328-3.126-1.1141.345-0.346
15-4.4-2.584-3.126-4.4-0.788-3.126-2.234-0.7881.8561.2590.1670.663-0.938-0.346-1.328-0.938
160.293-0.041.3610.0540.0230.023-0.6580.578-2.234-0.658-0.49-1.022-1.77-0.22-0.220.023