Model info
| Transcription factor | ZIC2 (GeneCards) | ||||||||
| Model | ZIC2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvhhhCCYGCdGdKn | ||||||||
| Best auROC (human) | 0.544 | ||||||||
| Best auROC (mouse) | 0.977 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 410 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| HGNC | HGNC:12873 | ||||||||
| EntrezGene | GeneID:7546 (SSTAR profile) | ||||||||
| UniProt ID | ZIC2_HUMAN | ||||||||
| UniProt AC | O95409 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZIC2 expression | ||||||||
| ReMap ChIP-seq dataset list | ZIC2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 78.0 | 64.0 | 161.0 | 107.0 |
| 02 | 118.0 | 60.0 | 188.0 | 44.0 |
| 03 | 89.0 | 175.0 | 65.0 | 81.0 |
| 04 | 42.0 | 194.0 | 38.0 | 136.0 |
| 05 | 78.0 | 156.0 | 45.0 | 131.0 |
| 06 | 6.0 | 374.0 | 12.0 | 18.0 |
| 07 | 19.0 | 371.0 | 1.0 | 19.0 |
| 08 | 34.0 | 78.0 | 0.0 | 298.0 |
| 09 | 33.0 | 10.0 | 343.0 | 24.0 |
| 10 | 3.0 | 326.0 | 45.0 | 36.0 |
| 11 | 46.0 | 9.0 | 46.0 | 309.0 |
| 12 | 10.0 | 23.0 | 367.0 | 10.0 |
| 13 | 137.0 | 48.0 | 74.0 | 151.0 |
| 14 | 13.0 | 23.0 | 302.0 | 72.0 |
| 15 | 144.0 | 121.0 | 58.0 | 87.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.269 | -0.462 | 0.446 | 0.042 |
| 02 | 0.139 | -0.525 | 0.6 | -0.827 |
| 03 | -0.139 | 0.529 | -0.447 | -0.232 |
| 04 | -0.872 | 0.631 | -0.968 | 0.279 |
| 05 | -0.269 | 0.415 | -0.805 | 0.242 |
| 06 | -2.629 | 1.284 | -2.041 | -1.674 |
| 07 | -1.624 | 1.276 | -3.727 | -1.624 |
| 08 | -1.075 | -0.269 | -4.236 | 1.058 |
| 09 | -1.103 | -2.202 | 1.198 | -1.406 |
| 10 | -3.139 | 1.147 | -0.805 | -1.02 |
| 11 | -0.784 | -2.293 | -0.784 | 1.094 |
| 12 | -2.202 | -1.446 | 1.265 | -2.202 |
| 13 | 0.286 | -0.742 | -0.32 | 0.383 |
| 14 | -1.97 | -1.446 | 1.071 | -0.347 |
| 15 | 0.336 | 0.164 | -0.558 | -0.161 |