We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZIC2
(GeneCards)
ModelZIC2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
D
Motif rank
0
ConsensusdvhhhCCYGCdGdKn
Best auROC (human)0.544
Best auROC (mouse)0.977
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)4
Aligned words410
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
HGNCHGNC:12873
EntrezGeneGeneID:7546
(SSTAR profile)
UniProt IDZIC2_HUMAN
UniProt ACO95409
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.61171
0.0005 5.436909999999999
0.0001 7.15521
GTEx tissue expression atlas ZIC2 expression
ReMap ChIP-seq dataset list ZIC2 datasets
Motifs in JASPAR
PCM
ACGT
0178.064.0161.0107.0
02118.060.0188.044.0
0389.0175.065.081.0
0442.0194.038.0136.0
0578.0156.045.0131.0
066.0374.012.018.0
0719.0371.01.019.0
0834.078.00.0298.0
0933.010.0343.024.0
103.0326.045.036.0
1146.09.046.0309.0
1210.023.0367.010.0
13137.048.074.0151.0
1413.023.0302.072.0
15144.0121.058.087.0
PWM
ACGT
01-0.269-0.4620.4460.042
020.139-0.5250.6-0.827
03-0.1390.529-0.447-0.232
04-0.8720.631-0.9680.279
05-0.2690.415-0.8050.242
06-2.6291.284-2.041-1.674
07-1.6241.276-3.727-1.624
08-1.075-0.269-4.2361.058
09-1.103-2.2021.198-1.406
10-3.1391.147-0.805-1.02
11-0.784-2.293-0.7841.094
12-2.202-1.4461.265-2.202
130.286-0.742-0.320.383
14-1.97-1.4461.071-0.347
150.3360.164-0.558-0.161