We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZic2
ModelZIC2_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusndRhhhCCTGCTGdGhn
Best auROC (human)0.511
Best auROC (mouse)0.987
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)4
Aligned words508
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
MGIMGI:106679
EntrezGene
UniProt IDZIC2_MOUSE
UniProt ACQ62520
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.040660000000001
0.0005 9.26671
0.0001 13.90211
GTEx tissue expression atlas Zic2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.09.086.09.035.025.019.0101.026.013.038.09.012.013.051.030.0
0218.014.062.03.027.017.07.09.047.026.0113.08.018.08.0119.04.0
0315.050.023.022.013.036.04.012.056.0188.028.029.01.012.08.03.0
0414.047.06.018.022.0117.09.0138.07.040.03.013.05.036.010.015.0
056.025.06.011.065.088.07.080.01.016.00.011.072.060.020.032.0
061.0143.00.00.01.0188.00.00.00.033.00.00.00.0133.01.00.0
070.02.00.00.024.0462.01.010.00.01.00.00.00.00.00.00.0
083.01.00.020.017.084.00.0364.00.00.00.01.00.00.00.010.0
093.00.017.00.023.04.054.04.00.00.00.00.015.05.0374.01.0
100.038.03.00.00.07.00.02.01.0388.038.018.00.03.02.00.0
110.00.00.01.030.02.011.0393.012.01.012.018.00.00.013.07.0
121.00.040.01.01.00.02.00.00.00.036.00.02.00.0416.01.0
132.00.02.00.00.00.00.00.0205.044.097.0148.02.00.00.00.0
140.011.0187.011.03.05.017.019.00.012.078.09.01.05.0112.030.0
150.04.00.00.011.05.00.017.0177.0109.030.078.018.025.04.022.0
1641.036.0102.027.036.039.016.052.04.09.09.012.013.027.033.044.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.26-1.2151.004-1.2150.112-0.22-0.491.165-0.181-0.860.193-1.215-0.938-0.860.485-0.04
02-0.543-0.7880.679-2.234-0.144-0.599-1.454-1.2150.404-0.1811.276-1.328-0.543-1.3281.328-1.975
03-0.7210.465-0.302-0.346-0.860.14-1.975-0.9380.5781.784-0.108-0.074-3.126-0.938-1.328-2.234
04-0.7880.404-1.6-0.543-0.3461.311-1.2151.476-1.4540.244-2.234-0.86-1.770.14-1.114-0.721
05-1.6-0.22-1.6-1.0220.7261.027-1.4540.932-3.126-0.658-4.4-1.0220.8280.646-0.4390.023
06-3.1261.511-4.4-4.4-3.1261.784-4.4-4.4-4.40.054-4.4-4.4-4.41.439-3.126-4.4
07-4.4-2.584-4.4-4.4-0.262.682-3.126-1.114-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4
08-2.234-3.126-4.4-0.439-0.5990.981-4.42.444-4.4-4.4-4.4-3.126-4.4-4.4-4.4-1.114
09-2.234-4.4-0.599-4.4-0.302-1.9750.542-1.975-4.4-4.4-4.4-4.4-0.721-1.772.471-3.126
10-4.40.193-2.234-4.4-4.4-1.454-4.4-2.584-3.1262.5080.193-0.543-4.4-2.234-2.584-4.4
11-4.4-4.4-4.4-3.126-0.04-2.584-1.0222.52-0.938-3.126-0.938-0.543-4.4-4.4-0.86-1.454
12-3.126-4.40.244-3.126-3.126-4.4-2.584-4.4-4.4-4.40.14-4.4-2.584-4.42.577-3.126
13-2.584-4.4-2.584-4.4-4.4-4.4-4.4-4.41.8710.3391.1241.545-2.584-4.4-4.4-4.4
14-4.4-1.0221.779-1.022-2.234-1.77-0.599-0.49-4.4-0.9380.907-1.215-3.126-1.771.268-0.04
15-4.4-1.975-4.4-4.4-1.022-1.77-4.4-0.5991.7241.241-0.040.907-0.543-0.22-1.975-0.346
160.2690.141.174-0.1440.140.219-0.6580.504-1.975-1.215-1.215-0.938-0.86-0.1440.0540.339