Model info
| Transcription factor | Zic2 | ||||||||
| Model | ZIC2_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRvYnCCTGCTGdGh | ||||||||
| Best auROC (human) | 0.502 | ||||||||
| Best auROC (mouse) | 0.98 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| MGI | MGI:106679 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | ZIC2_MOUSE | ||||||||
| UniProt AC | Q62520 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Zic2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 96.0 | 63.0 | 191.0 | 150.0 |
| 02 | 110.0 | 72.0 | 298.0 | 20.0 |
| 03 | 79.0 | 301.0 | 61.0 | 59.0 |
| 04 | 48.0 | 241.0 | 27.0 | 184.0 |
| 05 | 137.0 | 193.0 | 33.0 | 137.0 |
| 06 | 2.0 | 494.0 | 1.0 | 3.0 |
| 07 | 28.0 | 460.0 | 1.0 | 11.0 |
| 08 | 23.0 | 82.0 | 1.0 | 394.0 |
| 09 | 32.0 | 8.0 | 454.0 | 6.0 |
| 10 | 2.0 | 434.0 | 39.0 | 25.0 |
| 11 | 46.0 | 10.0 | 34.0 | 410.0 |
| 12 | 5.0 | 0.0 | 492.0 | 3.0 |
| 13 | 207.0 | 43.0 | 103.0 | 147.0 |
| 14 | 4.0 | 34.0 | 397.0 | 65.0 |
| 15 | 210.0 | 142.0 | 38.0 | 110.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.26 | -0.673 | 0.42 | 0.18 |
| 02 | -0.126 | -0.543 | 0.862 | -1.77 |
| 03 | -0.452 | 0.872 | -0.705 | -0.737 |
| 04 | -0.938 | 0.651 | -1.489 | 0.383 |
| 05 | 0.091 | 0.43 | -1.298 | 0.091 |
| 06 | -3.573 | 1.365 | -3.903 | -3.325 |
| 07 | -1.454 | 1.294 | -3.903 | -2.311 |
| 08 | -1.64 | -0.415 | -3.903 | 1.14 |
| 09 | -1.328 | -2.584 | 1.281 | -2.819 |
| 10 | -3.573 | 1.236 | -1.138 | -1.561 |
| 11 | -0.979 | -2.394 | -1.27 | 1.179 |
| 12 | -2.961 | -4.4 | 1.361 | -3.325 |
| 13 | 0.5 | -1.044 | -0.191 | 0.16 |
| 14 | -3.126 | -1.27 | 1.147 | -0.643 |
| 15 | 0.514 | 0.126 | -1.163 | -0.126 |