Transcription factor | ZIC3 (GeneCards) | ||||||||
Model | ZIC3_HUMAN.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | dvvbhCCTGCTGdGn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.943 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 5 | ||||||||
Aligned words | 170 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
HGNC | HGNC:12874 | ||||||||
EntrezGene | GeneID:7547 (SSTAR profile) | ||||||||
UniProt ID | ZIC3_HUMAN | ||||||||
UniProt AC | O60481 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | ZIC3 expression | ||||||||
ReMap ChIP-seq dataset list | ZIC3 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 28.0 | 26.0 | 77.0 | 38.0 |
02 | 28.0 | 39.0 | 90.0 | 12.0 |
03 | 37.0 | 84.0 | 27.0 | 21.0 |
04 | 17.0 | 78.0 | 21.0 | 53.0 |
05 | 37.0 | 64.0 | 16.0 | 52.0 |
06 | 0.0 | 168.0 | 1.0 | 0.0 |
07 | 14.0 | 153.0 | 0.0 | 2.0 |
08 | 10.0 | 22.0 | 0.0 | 137.0 |
09 | 8.0 | 10.0 | 148.0 | 3.0 |
10 | 0.0 | 155.0 | 14.0 | 0.0 |
11 | 8.0 | 1.0 | 2.0 | 158.0 |
12 | 2.0 | 5.0 | 162.0 | 0.0 |
13 | 55.0 | 5.0 | 34.0 | 75.0 |
14 | 1.0 | 5.0 | 148.0 | 15.0 |
15 | 63.0 | 43.0 | 24.0 | 39.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.397 | -0.467 | 0.587 | -0.103 |
02 | -0.397 | -0.078 | 0.74 | -1.187 |
03 | -0.129 | 0.672 | -0.431 | -0.67 |
04 | -0.868 | 0.6 | -0.67 | 0.221 |
05 | -0.129 | 0.405 | -0.924 | 0.202 |
06 | -3.525 | 1.358 | -2.948 | -3.525 |
07 | -1.047 | 1.265 | -3.525 | -2.585 |
08 | -1.35 | -0.626 | -3.525 | 1.156 |
09 | -1.545 | -1.35 | 1.232 | -2.319 |
10 | -3.525 | 1.278 | -1.047 | -3.525 |
11 | -1.545 | -2.948 | -2.585 | 1.297 |
12 | -2.585 | -1.936 | 1.322 | -3.525 |
13 | 0.257 | -1.936 | -0.21 | 0.561 |
14 | -2.948 | -1.936 | 1.232 | -0.983 |
15 | 0.39 | 0.017 | -0.543 | -0.078 |