Model info
| Transcription factor | ZIC4 (GeneCards) | ||||||||
| Model | ZIC4_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dMdCMGCGGGGGKYv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 4313 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| HGNC | HGNC:20393 | ||||||||
| EntrezGene | GeneID:84107 (SSTAR profile) | ||||||||
| UniProt ID | ZIC4_HUMAN | ||||||||
| UniProt AC | Q8N9L1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZIC4 expression | ||||||||
| ReMap ChIP-seq dataset list | ZIC4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 882.0 | 424.0 | 1654.0 | 1353.0 |
| 02 | 586.5 | 2936.5 | 433.5 | 356.5 |
| 03 | 1752.5 | 319.5 | 1563.5 | 677.5 |
| 04 | 16.25 | 4240.25 | 13.25 | 43.25 |
| 05 | 2870.5 | 684.5 | 345.5 | 412.5 |
| 06 | 948.25 | 33.25 | 3329.25 | 2.25 |
| 07 | 3.0 | 3821.0 | 1.0 | 488.0 |
| 08 | 705.0 | 0.0 | 3604.0 | 4.0 |
| 09 | 0.0 | 0.0 | 4298.0 | 15.0 |
| 10 | 0.0 | 0.0 | 4313.0 | 0.0 |
| 11 | 71.0 | 32.0 | 3994.0 | 216.0 |
| 12 | 24.25 | 30.25 | 4026.25 | 232.25 |
| 13 | 301.5 | 294.5 | 3341.5 | 375.5 |
| 14 | 329.25 | 755.25 | 549.25 | 2679.25 |
| 15 | 983.25 | 2130.25 | 687.25 | 512.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.2 | -0.93 | 0.427 | 0.227 |
| 02 | -0.607 | 1.001 | -0.908 | -1.103 |
| 03 | 0.485 | -1.212 | 0.371 | -0.464 |
| 04 | -4.076 | 1.368 | -4.254 | -3.171 |
| 05 | 0.978 | -0.453 | -1.134 | -0.958 |
| 06 | -0.128 | -3.42 | 1.126 | -5.517 |
| 07 | -5.357 | 1.264 | -5.856 | -0.79 |
| 08 | -0.424 | -6.247 | 1.205 | -5.178 |
| 09 | -6.247 | -6.247 | 1.381 | -4.146 |
| 10 | -6.247 | -6.247 | 1.385 | -6.247 |
| 11 | -2.693 | -3.456 | 1.308 | -1.6 |
| 12 | -3.714 | -3.509 | 1.316 | -1.528 |
| 13 | -1.269 | -1.293 | 1.13 | -1.051 |
| 14 | -1.182 | -0.355 | -0.673 | 0.909 |
| 15 | -0.092 | 0.68 | -0.449 | -0.742 |