We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZIC4
(GeneCards)
ModelZIC4_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length15
Quality
D
Motif rank
0
ConsensusdMdCMGCGGGGGKYv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words4313
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
HGNCHGNC:20393
EntrezGeneGeneID:84107
(SSTAR profile)
UniProt IDZIC4_HUMAN
UniProt ACQ8N9L1
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.19906
0.0005 1.6902599999999999
0.0001 4.74291
GTEx tissue expression atlas ZIC4 expression
ReMap ChIP-seq dataset list ZIC4 datasets
Motifs in JASPAR
PCM
ACGT
01882.0424.01654.01353.0
02586.52936.5433.5356.5
031752.5319.51563.5677.5
0416.254240.2513.2543.25
052870.5684.5345.5412.5
06948.2533.253329.252.25
073.03821.01.0488.0
08705.00.03604.04.0
090.00.04298.015.0
100.00.04313.00.0
1171.032.03994.0216.0
1224.2530.254026.25232.25
13301.5294.53341.5375.5
14329.25755.25549.252679.25
15983.252130.25687.25512.25
PWM
ACGT
01-0.2-0.930.4270.227
02-0.6071.001-0.908-1.103
030.485-1.2120.371-0.464
04-4.0761.368-4.254-3.171
050.978-0.453-1.134-0.958
06-0.128-3.421.126-5.517
07-5.3571.264-5.856-0.79
08-0.424-6.2471.205-5.178
09-6.247-6.2471.381-4.146
10-6.247-6.2471.385-6.247
11-2.693-3.4561.308-1.6
12-3.714-3.5091.316-1.528
13-1.269-1.2931.13-1.051
14-1.182-0.355-0.6730.909
15-0.0920.68-0.449-0.742