We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZIM3
(GeneCards)
ModelZIM3_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
C
Motif rank
0
ConsensusdKnddnbdRGbTTTCTGTTdhh
Best auROC (human)0.989
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words471
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyunclassified {2.3.3.0}
HGNCHGNC:16366
EntrezGeneGeneID:114026
(SSTAR profile)
UniProt IDZIM3_HUMAN
UniProt ACQ96PE6
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.16076
0.0005 7.95486
0.0001 13.911159999999999
GTEx tissue expression atlas ZIM3 expression
ReMap ChIP-seq dataset list ZIM3 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.011.011.060.04.013.01.052.04.011.010.091.03.016.039.0133.0
024.02.03.08.019.04.07.021.023.04.014.020.050.092.096.098.0
0321.09.041.025.071.06.02.023.053.011.015.041.030.034.038.045.0
0424.030.044.077.024.06.05.025.015.018.011.052.015.017.027.075.0
059.030.012.027.035.011.02.023.037.018.015.017.071.039.035.084.0
0611.019.058.064.019.014.04.061.010.09.011.034.015.027.051.058.0
077.08.025.015.017.07.03.042.016.012.022.074.015.011.065.0126.0
0812.01.039.03.024.01.03.010.042.02.064.07.0120.011.0112.014.0
094.01.0186.07.01.00.06.08.04.00.0203.011.00.00.034.00.0
103.01.05.00.01.00.00.00.080.079.0182.088.02.09.015.00.0
1121.010.07.048.012.02.00.075.026.09.02.0165.01.02.03.082.0
120.00.00.060.01.00.00.022.00.00.00.012.00.02.00.0368.0
130.00.00.01.00.01.00.01.00.00.00.00.04.06.029.0423.0
140.04.00.00.00.07.00.00.00.029.00.00.00.0425.00.00.0
150.00.00.00.00.00.00.0465.00.00.00.00.00.00.00.00.0
160.00.00.00.00.00.00.00.00.00.00.00.01.09.0440.015.0
170.00.00.01.00.00.00.09.016.03.00.0421.00.00.00.015.0
180.00.00.016.00.00.00.03.00.00.00.00.00.03.00.0443.0
190.00.00.00.01.00.00.02.00.00.00.00.0100.038.0201.0123.0
205.077.08.011.011.017.00.010.026.093.023.059.018.038.027.042.0
217.018.06.029.022.069.03.0131.014.016.013.015.011.030.013.068.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.529-0.95-0.950.718-1.905-0.789-3.0580.576-1.905-0.95-1.0421.132-2.164-0.5860.2911.511
02-1.905-2.514-2.164-1.256-0.418-1.905-1.383-0.32-0.231-1.905-0.716-0.3680.5371.1431.1861.206
03-0.32-1.1440.34-0.1480.886-1.529-2.514-0.2310.595-0.95-0.6490.340.0310.1550.2650.433
04-0.1890.0310.410.966-0.189-1.529-1.699-0.148-0.649-0.471-0.950.576-0.649-0.527-0.0730.94
05-1.1440.031-0.866-0.0730.184-0.95-2.514-0.2310.239-0.471-0.649-0.5270.8860.2910.1841.053
06-0.95-0.4180.6840.782-0.418-0.716-1.9050.735-1.042-1.144-0.950.155-0.649-0.0730.5570.684
07-1.383-1.256-0.148-0.649-0.527-1.383-2.1640.364-0.586-0.866-0.2740.927-0.649-0.950.7981.457
08-0.866-3.0580.291-2.164-0.189-3.058-2.164-1.0420.364-2.5140.782-1.3831.408-0.951.339-0.716
09-1.905-3.0581.845-1.383-3.058-4.34-1.529-1.256-1.905-4.341.933-0.95-4.34-4.340.155-4.34
10-2.164-3.058-1.699-4.34-3.058-4.34-4.34-4.341.0040.9921.8241.099-2.514-1.144-0.649-4.34
11-0.32-1.042-1.3830.497-0.866-2.514-4.340.94-0.11-1.144-2.5141.726-3.058-2.514-2.1641.029
12-4.34-4.34-4.340.718-3.058-4.34-4.34-0.274-4.34-4.34-4.34-0.866-4.34-2.514-4.342.527
13-4.34-4.34-4.34-3.058-4.34-3.058-4.34-3.058-4.34-4.34-4.34-4.34-1.905-1.529-0.0022.666
14-4.34-1.905-4.34-4.34-4.34-1.383-4.34-4.34-4.34-0.002-4.34-4.34-4.342.67-4.34-4.34
15-4.34-4.34-4.34-4.34-4.34-4.34-4.342.76-4.34-4.34-4.34-4.34-4.34-4.34-4.34-4.34
16-4.34-4.34-4.34-4.34-4.34-4.34-4.34-4.34-4.34-4.34-4.34-4.34-3.058-1.1442.705-0.649
17-4.34-4.34-4.34-3.058-4.34-4.34-4.34-1.144-0.586-2.164-4.342.661-4.34-4.34-4.34-0.649
18-4.34-4.34-4.34-0.586-4.34-4.34-4.34-2.164-4.34-4.34-4.34-4.34-4.34-2.164-4.342.712
19-4.34-4.34-4.34-4.34-3.058-4.34-4.34-2.514-4.34-4.34-4.34-4.341.2260.2651.9231.433
20-1.6990.966-1.256-0.95-0.95-0.527-4.34-1.042-0.111.154-0.2310.701-0.4710.265-0.0730.364
21-1.383-0.471-1.529-0.002-0.2740.857-2.1641.496-0.716-0.586-0.789-0.649-0.950.031-0.7890.843