Model info
| Transcription factor | ZIM3 (GeneCards) | ||||||||
| Model | ZIM3_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bdRGvTTTCTGTTdhhnbh | ||||||||
| Best auROC (human) | 0.989 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 471 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:16366 | ||||||||
| EntrezGene | GeneID:114026 (SSTAR profile) | ||||||||
| UniProt ID | ZIM3_HUMAN | ||||||||
| UniProt AC | Q96PE6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZIM3 expression | ||||||||
| ReMap ChIP-seq dataset list | ZIM3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 60.0 | 71.0 | 121.0 | 219.0 |
| 02 | 58.0 | 39.0 | 115.0 | 259.0 |
| 03 | 198.0 | 17.0 | 221.0 | 35.0 |
| 04 | 10.0 | 1.0 | 429.0 | 31.0 |
| 05 | 92.0 | 91.0 | 204.0 | 84.0 |
| 06 | 65.0 | 25.0 | 9.0 | 372.0 |
| 07 | 1.0 | 1.0 | 0.0 | 469.0 |
| 08 | 5.0 | 6.0 | 29.0 | 431.0 |
| 09 | 0.0 | 471.0 | 0.0 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 471.0 |
| 11 | 1.0 | 10.0 | 447.0 | 13.0 |
| 12 | 17.0 | 4.0 | 0.0 | 450.0 |
| 13 | 0.0 | 2.0 | 0.0 | 469.0 |
| 14 | 101.0 | 39.0 | 204.0 | 127.0 |
| 15 | 61.0 | 228.0 | 54.0 | 128.0 |
| 16 | 51.0 | 138.0 | 33.0 | 249.0 |
| 17 | 92.0 | 62.0 | 92.0 | 225.0 |
| 18 | 71.0 | 85.0 | 207.0 | 108.0 |
| 19 | 62.0 | 193.0 | 54.0 | 162.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.662 | -0.497 | 0.027 | 0.615 |
| 02 | -0.695 | -1.079 | -0.023 | 0.781 |
| 03 | 0.514 | -1.862 | 0.624 | -1.183 |
| 04 | -2.336 | -3.85 | 1.283 | -1.299 |
| 05 | -0.243 | -0.254 | 0.544 | -0.333 |
| 06 | -0.584 | -1.503 | -2.426 | 1.141 |
| 07 | -3.85 | -3.85 | -4.351 | 1.372 |
| 08 | -2.904 | -2.761 | -1.363 | 1.288 |
| 09 | -4.351 | 1.377 | -4.351 | -4.351 |
| 10 | -4.351 | -4.351 | -4.351 | 1.377 |
| 11 | -3.85 | -2.336 | 1.324 | -2.105 |
| 12 | -1.862 | -3.07 | -4.351 | 1.331 |
| 13 | -4.351 | -3.518 | -4.351 | 1.372 |
| 14 | -0.151 | -1.079 | 0.544 | 0.075 |
| 15 | -0.646 | 0.655 | -0.764 | 0.082 |
| 16 | -0.82 | 0.157 | -1.239 | 0.742 |
| 17 | -0.243 | -0.63 | -0.243 | 0.641 |
| 18 | -0.497 | -0.321 | 0.559 | -0.085 |
| 19 | -0.63 | 0.489 | -0.764 | 0.316 |