Transcription factor | ZKSCAN1 (GeneCards) | ||||||||
Model | ZKSC1_HUMAN.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | dvhdbhCCTACTRWGYGYh | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.961 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 6 | ||||||||
Aligned words | 500 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | ZNF24-like factors {2.3.3.10} | ||||||||
HGNC | HGNC:13101 | ||||||||
EntrezGene | GeneID:7586 (SSTAR profile) | ||||||||
UniProt ID | ZKSC1_HUMAN | ||||||||
UniProt AC | P17029 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | ZKSCAN1 expression | ||||||||
ReMap ChIP-seq dataset list | ZKSCAN1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 137.0 | 62.0 | 77.0 | 224.0 |
02 | 118.0 | 70.0 | 259.0 | 53.0 |
03 | 218.0 | 111.0 | 51.0 | 120.0 |
04 | 154.0 | 50.0 | 229.0 | 67.0 |
05 | 55.0 | 142.0 | 212.0 | 91.0 |
06 | 209.0 | 116.0 | 86.0 | 89.0 |
07 | 14.0 | 467.0 | 11.0 | 8.0 |
08 | 27.0 | 440.0 | 2.0 | 31.0 |
09 | 2.0 | 88.0 | 24.0 | 386.0 |
10 | 459.0 | 19.0 | 11.0 | 11.0 |
11 | 9.0 | 463.0 | 21.0 | 7.0 |
12 | 19.0 | 11.0 | 3.0 | 467.0 |
13 | 191.0 | 17.0 | 288.0 | 4.0 |
14 | 67.0 | 25.0 | 50.0 | 358.0 |
15 | 0.0 | 19.0 | 473.0 | 8.0 |
16 | 11.0 | 71.0 | 30.0 | 388.0 |
17 | 32.0 | 22.0 | 410.0 | 36.0 |
18 | 48.0 | 342.0 | 37.0 | 73.0 |
19 | 118.0 | 180.0 | 45.0 | 157.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.091 | -0.689 | -0.477 | 0.578 |
02 | -0.057 | -0.57 | 0.722 | -0.841 |
03 | 0.551 | -0.117 | -0.879 | -0.04 |
04 | 0.206 | -0.898 | 0.6 | -0.613 |
05 | -0.805 | 0.126 | 0.523 | -0.313 |
06 | 0.509 | -0.074 | -0.368 | -0.335 |
07 | -2.096 | 1.309 | -2.311 | -2.584 |
08 | -1.489 | 1.25 | -3.573 | -1.358 |
09 | -3.573 | -0.346 | -1.6 | 1.119 |
10 | 1.292 | -1.818 | -2.311 | -2.311 |
11 | -2.484 | 1.3 | -1.725 | -2.694 |
12 | -1.818 | -2.311 | -3.325 | 1.309 |
13 | 0.42 | -1.92 | 0.828 | -3.126 |
14 | -0.613 | -1.561 | -0.898 | 1.044 |
15 | -4.4 | -1.818 | 1.322 | -2.584 |
16 | -2.311 | -0.556 | -1.389 | 1.124 |
17 | -1.328 | -1.681 | 1.179 | -1.215 |
18 | -0.938 | 0.999 | -1.189 | -0.529 |
19 | -0.057 | 0.361 | -1.0 | 0.225 |