Transcription factor | ZNF140 (GeneCards) | ||||||||
Model | ZN140_HUMAN.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 27 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | YRAYYCAGCAATTCCACTCCYRRRYRY | ||||||||
Best auROC (human) | 0.98 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 4 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 249 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | ZNF302-like factors {2.3.3.44} | ||||||||
HGNC | HGNC:12925 | ||||||||
EntrezGene | GeneID:7699 (SSTAR profile) | ||||||||
UniProt ID | ZN140_HUMAN | ||||||||
UniProt AC | P52738 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | ZNF140 expression | ||||||||
ReMap ChIP-seq dataset list | ZNF140 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 2.0 | 5.0 | 3.0 | 8.0 | 21.0 | 4.0 | 8.0 | 2.0 | 7.0 | 0.0 | 14.0 | 2.0 | 22.0 | 6.0 | 142.0 | 3.0 |
02 | 33.0 | 6.0 | 10.0 | 3.0 | 8.0 | 5.0 | 0.0 | 2.0 | 154.0 | 4.0 | 5.0 | 4.0 | 9.0 | 1.0 | 5.0 | 0.0 |
03 | 5.0 | 133.0 | 12.0 | 54.0 | 2.0 | 7.0 | 0.0 | 7.0 | 2.0 | 13.0 | 2.0 | 3.0 | 2.0 | 6.0 | 0.0 | 1.0 |
04 | 0.0 | 7.0 | 1.0 | 3.0 | 5.0 | 128.0 | 1.0 | 25.0 | 0.0 | 9.0 | 2.0 | 3.0 | 5.0 | 47.0 | 4.0 | 9.0 |
05 | 0.0 | 6.0 | 1.0 | 3.0 | 3.0 | 170.0 | 0.0 | 18.0 | 0.0 | 6.0 | 1.0 | 1.0 | 0.0 | 29.0 | 3.0 | 8.0 |
06 | 3.0 | 0.0 | 0.0 | 0.0 | 204.0 | 1.0 | 1.0 | 5.0 | 4.0 | 0.0 | 1.0 | 0.0 | 27.0 | 1.0 | 1.0 | 1.0 |
07 | 9.0 | 0.0 | 229.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 1.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 6.0 | 0.0 |
08 | 0.0 | 10.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 239.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 247.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
10 | 244.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
11 | 0.0 | 0.0 | 0.0 | 246.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 |
12 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 249.0 |
13 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 249.0 | 0.0 | 0.0 |
14 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 197.0 | 0.0 | 50.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
15 | 0.0 | 0.0 | 2.0 | 0.0 | 142.0 | 0.0 | 55.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 48.0 | 0.0 |
16 | 0.0 | 144.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 105.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
17 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 246.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
18 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 246.0 | 0.0 | 0.0 |
19 | 0.0 | 0.0 | 0.0 | 0.0 | 18.0 | 213.0 | 0.0 | 18.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
20 | 0.0 | 5.0 | 1.0 | 12.0 | 15.0 | 27.0 | 3.0 | 168.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 4.0 | 10.0 |
21 | 5.0 | 3.0 | 2.0 | 5.0 | 27.0 | 1.0 | 2.0 | 6.0 | 4.0 | 1.0 | 3.0 | 0.0 | 146.0 | 6.0 | 25.0 | 13.0 |
22 | 25.0 | 5.0 | 146.0 | 6.0 | 4.0 | 4.0 | 3.0 | 0.0 | 6.0 | 6.0 | 19.0 | 1.0 | 5.0 | 4.0 | 9.0 | 6.0 |
23 | 6.0 | 2.0 | 26.0 | 6.0 | 1.0 | 7.0 | 4.0 | 7.0 | 26.0 | 16.0 | 118.0 | 17.0 | 3.0 | 1.0 | 5.0 | 4.0 |
24 | 2.0 | 3.0 | 3.0 | 28.0 | 4.0 | 9.0 | 1.0 | 12.0 | 14.0 | 20.0 | 10.0 | 109.0 | 6.0 | 5.0 | 6.0 | 17.0 |
25 | 15.0 | 2.0 | 2.0 | 7.0 | 25.0 | 5.0 | 0.0 | 7.0 | 7.0 | 5.0 | 6.0 | 2.0 | 122.0 | 7.0 | 30.0 | 7.0 |
26 | 8.0 | 18.0 | 12.0 | 131.0 | 6.0 | 3.0 | 0.0 | 10.0 | 1.0 | 4.0 | 3.0 | 30.0 | 5.0 | 7.0 | 2.0 | 9.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -1.915 | -1.091 | -1.559 | -0.645 | 0.294 | -1.298 | -0.645 | -1.915 | -0.773 | -3.831 | -0.103 | -1.915 | 0.34 | -0.919 | 2.191 | -1.559 |
02 | 0.74 | -0.919 | -0.43 | -1.559 | -0.645 | -1.091 | -3.831 | -1.915 | 2.272 | -1.298 | -1.091 | -1.298 | -0.532 | -2.471 | -1.091 | -3.831 |
03 | -1.091 | 2.126 | -0.254 | 1.229 | -1.915 | -0.773 | -3.831 | -0.773 | -1.915 | -0.176 | -1.915 | -1.559 | -1.915 | -0.919 | -3.831 | -2.471 |
04 | -3.831 | -0.773 | -2.471 | -1.559 | -1.091 | 2.088 | -2.471 | 0.466 | -3.831 | -0.532 | -1.915 | -1.559 | -1.091 | 1.091 | -1.298 | -0.532 |
05 | -3.831 | -0.919 | -2.471 | -1.559 | -1.559 | 2.371 | -3.831 | 0.143 | -3.831 | -0.919 | -2.471 | -2.471 | -3.831 | 0.612 | -1.559 | -0.645 |
06 | -1.559 | -3.831 | -3.831 | -3.831 | 2.553 | -2.471 | -2.471 | -1.091 | -1.298 | -3.831 | -2.471 | -3.831 | 0.542 | -2.471 | -2.471 | -2.471 |
07 | -0.532 | -3.831 | 2.668 | -3.831 | -3.831 | -3.831 | -1.915 | -3.831 | -2.471 | -3.831 | -1.915 | -3.831 | -3.831 | -3.831 | -0.919 | -3.831 |
08 | -3.831 | -0.43 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | 2.711 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 |
09 | -3.831 | -3.831 | -3.831 | -3.831 | 2.744 | -3.831 | -2.471 | -2.471 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 |
10 | 2.732 | -3.831 | -1.559 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -2.471 | -3.831 | -3.831 | -3.831 | -2.471 | -3.831 | -3.831 | -3.831 |
11 | -3.831 | -3.831 | -3.831 | 2.74 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -1.559 | -3.831 | -3.831 | -3.831 | -3.831 |
12 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | 2.752 |
13 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | 2.752 | -3.831 | -3.831 |
14 | -3.831 | -3.831 | -3.831 | -3.831 | -1.915 | 2.518 | -3.831 | 1.152 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 |
15 | -3.831 | -3.831 | -1.915 | -3.831 | 2.191 | -3.831 | 1.247 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -1.915 | -3.831 | 1.112 | -3.831 |
16 | -3.831 | 2.205 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | 1.89 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 |
17 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -1.559 | -3.831 | 2.74 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 |
18 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -1.559 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | 2.74 | -3.831 | -3.831 |
19 | -3.831 | -3.831 | -3.831 | -3.831 | 0.143 | 2.596 | -3.831 | 0.143 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 |
20 | -3.831 | -1.091 | -2.471 | -0.254 | -0.036 | 0.542 | -1.559 | 2.359 | -3.831 | -3.831 | -3.831 | -3.831 | -3.831 | -1.298 | -1.298 | -0.43 |
21 | -1.091 | -1.559 | -1.915 | -1.091 | 0.542 | -2.471 | -1.915 | -0.919 | -1.298 | -2.471 | -1.559 | -3.831 | 2.219 | -0.919 | 0.466 | -0.176 |
22 | 0.466 | -1.091 | 2.219 | -0.919 | -1.298 | -1.298 | -1.559 | -3.831 | -0.919 | -0.919 | 0.196 | -2.471 | -1.091 | -1.298 | -0.532 | -0.919 |
23 | -0.919 | -1.915 | 0.504 | -0.919 | -2.471 | -0.773 | -1.298 | -0.773 | 0.504 | 0.027 | 2.007 | 0.087 | -1.559 | -2.471 | -1.091 | -1.298 |
24 | -1.915 | -1.559 | -1.559 | 0.578 | -1.298 | -0.532 | -2.471 | -0.254 | -0.103 | 0.246 | -0.43 | 1.928 | -0.919 | -1.091 | -0.919 | 0.087 |
25 | -0.036 | -1.915 | -1.915 | -0.773 | 0.466 | -1.091 | -3.831 | -0.773 | -0.773 | -1.091 | -0.919 | -1.915 | 2.04 | -0.773 | 0.646 | -0.773 |
26 | -0.645 | 0.143 | -0.254 | 2.111 | -0.919 | -1.559 | -3.831 | -0.43 | -2.471 | -1.298 | -1.559 | 0.646 | -1.091 | -0.773 | -1.915 | -0.532 |