Model info
| Transcription factor | ZNF140 (GeneCards) | ||||||||
| Model | ZN140_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 24 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hvddvnbYWKCAATTCYRCTCMhh | ||||||||
| Best auROC (human) | 0.984 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 450 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZNF302-like factors {2.3.3.44} | ||||||||
| HGNC | HGNC:12925 | ||||||||
| EntrezGene | GeneID:7699 (SSTAR profile) | ||||||||
| UniProt ID | ZN140_HUMAN | ||||||||
| UniProt AC | P52738 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF140 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF140 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 73.0 | 91.0 | 58.0 | 228.0 |
| 02 | 226.0 | 79.0 | 80.0 | 65.0 |
| 03 | 78.0 | 65.0 | 70.0 | 237.0 |
| 04 | 80.0 | 52.0 | 239.0 | 79.0 |
| 05 | 256.0 | 74.0 | 61.0 | 59.0 |
| 06 | 47.0 | 221.0 | 47.0 | 135.0 |
| 07 | 39.0 | 267.0 | 70.0 | 74.0 |
| 08 | 65.0 | 271.0 | 20.0 | 94.0 |
| 09 | 292.0 | 23.0 | 30.0 | 105.0 |
| 10 | 36.0 | 8.0 | 353.0 | 53.0 |
| 11 | 4.0 | 432.0 | 5.0 | 9.0 |
| 12 | 375.0 | 44.0 | 8.0 | 23.0 |
| 13 | 413.0 | 8.0 | 24.0 | 5.0 |
| 14 | 2.0 | 9.0 | 1.0 | 438.0 |
| 15 | 4.0 | 2.0 | 2.0 | 442.0 |
| 16 | 5.0 | 439.0 | 2.0 | 4.0 |
| 17 | 31.0 | 309.0 | 6.0 | 104.0 |
| 18 | 211.0 | 10.0 | 225.0 | 4.0 |
| 19 | 10.0 | 385.0 | 21.0 | 34.0 |
| 20 | 6.0 | 47.0 | 5.0 | 392.0 |
| 21 | 2.0 | 425.0 | 1.0 | 22.0 |
| 22 | 71.0 | 320.0 | 7.0 | 52.0 |
| 23 | 77.0 | 79.0 | 36.0 | 258.0 |
| 24 | 210.0 | 68.0 | 58.0 | 114.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.425 | -0.209 | -0.65 | 0.7 |
| 02 | 0.691 | -0.348 | -0.335 | -0.539 |
| 03 | -0.36 | -0.539 | -0.466 | 0.738 |
| 04 | -0.335 | -0.756 | 0.746 | -0.348 |
| 05 | 0.815 | -0.412 | -0.601 | -0.633 |
| 06 | -0.854 | 0.669 | -0.854 | 0.18 |
| 07 | -1.034 | 0.857 | -0.466 | -0.412 |
| 08 | -0.539 | 0.871 | -1.667 | -0.177 |
| 09 | 0.946 | -1.537 | -1.286 | -0.068 |
| 10 | -1.111 | -2.482 | 1.134 | -0.738 |
| 11 | -3.027 | 1.336 | -2.86 | -2.382 |
| 12 | 1.195 | -0.918 | -2.482 | -1.537 |
| 13 | 1.291 | -2.482 | -1.497 | -2.86 |
| 14 | -3.476 | -2.382 | -3.809 | 1.349 |
| 15 | -3.027 | -3.476 | -3.476 | 1.358 |
| 16 | -2.86 | 1.352 | -3.476 | -3.027 |
| 17 | -1.254 | 1.002 | -2.718 | -0.077 |
| 18 | 0.623 | -2.292 | 0.686 | -3.027 |
| 19 | -2.292 | 1.221 | -1.622 | -1.166 |
| 20 | -2.718 | -0.854 | -2.86 | 1.239 |
| 21 | -3.476 | 1.319 | -3.809 | -1.578 |
| 22 | -0.452 | 1.037 | -2.593 | -0.756 |
| 23 | -0.373 | -0.348 | -1.111 | 0.822 |
| 24 | 0.618 | -0.495 | -0.65 | 0.013 |