Model info
| Transcription factor | Znf143 | ||||||||
| Model | ZN143_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dGShYbMTGGGAvdTGTAGTYY | ||||||||
| Best auROC (human) | 0.982 | ||||||||
| Best auROC (mouse) | 0.979 | ||||||||
| Peak sets in benchmark (human) | 28 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 463 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZNF76-like factors {2.3.3.28} | ||||||||
| MGI | MGI:1277969 | ||||||||
| EntrezGene | GeneID:20841 (SSTAR profile) | ||||||||
| UniProt ID | ZN143_MOUSE | ||||||||
| UniProt AC | O70230 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Znf143 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 78.0 | 27.0 | 232.0 | 126.0 |
| 02 | 14.0 | 12.0 | 421.0 | 16.0 |
| 03 | 42.0 | 296.0 | 97.0 | 28.0 |
| 04 | 210.0 | 181.0 | 25.0 | 47.0 |
| 05 | 13.0 | 95.0 | 33.0 | 322.0 |
| 06 | 20.0 | 96.0 | 204.0 | 143.0 |
| 07 | 55.0 | 335.0 | 36.0 | 37.0 |
| 08 | 5.0 | 77.0 | 11.0 | 370.0 |
| 09 | 6.0 | 3.0 | 454.0 | 0.0 |
| 10 | 2.0 | 2.0 | 454.0 | 5.0 |
| 11 | 13.0 | 1.0 | 443.0 | 6.0 |
| 12 | 407.0 | 14.0 | 27.0 | 15.0 |
| 13 | 223.0 | 45.0 | 153.0 | 42.0 |
| 14 | 173.0 | 41.0 | 50.0 | 199.0 |
| 15 | 14.0 | 43.0 | 24.0 | 382.0 |
| 16 | 10.0 | 5.0 | 447.0 | 1.0 |
| 17 | 29.0 | 20.0 | 35.0 | 379.0 |
| 18 | 421.0 | 3.0 | 35.0 | 4.0 |
| 19 | 5.0 | 6.0 | 446.0 | 6.0 |
| 20 | 3.0 | 12.0 | 17.0 | 431.0 |
| 21 | 10.0 | 225.0 | 19.0 | 209.0 |
| 22 | 18.0 | 263.0 | 25.0 | 157.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.388 | -1.413 | 0.689 | 0.084 |
| 02 | -2.022 | -2.159 | 1.282 | -1.9 |
| 03 | -0.991 | 0.931 | -0.174 | -1.379 |
| 04 | 0.59 | 0.442 | -1.486 | -0.882 |
| 05 | -2.088 | -0.195 | -1.223 | 1.015 |
| 06 | -1.695 | -0.184 | 0.561 | 0.209 |
| 07 | -0.73 | 1.054 | -1.139 | -1.113 |
| 08 | -2.888 | -0.401 | -2.236 | 1.153 |
| 09 | -2.745 | -3.253 | 1.357 | -4.336 |
| 10 | -3.502 | -3.502 | 1.357 | -2.888 |
| 11 | -2.088 | -3.835 | 1.332 | -2.745 |
| 12 | 1.248 | -2.022 | -1.413 | -1.959 |
| 13 | 0.649 | -0.924 | 0.276 | -0.991 |
| 14 | 0.398 | -1.014 | -0.822 | 0.536 |
| 15 | -2.022 | -0.968 | -1.525 | 1.185 |
| 16 | -2.319 | -2.888 | 1.341 | -3.835 |
| 17 | -1.346 | -1.695 | -1.166 | 1.177 |
| 18 | 1.282 | -3.253 | -1.166 | -3.054 |
| 19 | -2.888 | -2.745 | 1.339 | -2.745 |
| 20 | -3.253 | -2.159 | -1.845 | 1.305 |
| 21 | -2.319 | 0.658 | -1.742 | 0.585 |
| 22 | -1.792 | 0.813 | -1.486 | 0.301 |