Model info
| Transcription factor | ZNF250 (GeneCards) | ||||||||
| Model | ZN250_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TACCATRCTGTTTTGRTTAC | ||||||||
| Best auROC (human) | 0.904 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 360 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:13044 | ||||||||
| EntrezGene | GeneID:58500 (SSTAR profile) | ||||||||
| UniProt ID | ZN250_HUMAN | ||||||||
| UniProt AC | P15622 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF250 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF250 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.0 | 18.0 | 13.0 | 323.0 |
| 02 | 283.0 | 1.0 | 67.0 | 9.0 |
| 03 | 10.0 | 339.0 | 2.0 | 9.0 |
| 04 | 0.0 | 354.0 | 1.0 | 5.0 |
| 05 | 341.0 | 1.0 | 10.0 | 8.0 |
| 06 | 2.0 | 80.0 | 4.0 | 274.0 |
| 07 | 151.0 | 1.0 | 205.0 | 3.0 |
| 08 | 1.0 | 339.0 | 1.0 | 19.0 |
| 09 | 8.0 | 5.0 | 5.0 | 342.0 |
| 10 | 14.0 | 3.0 | 342.0 | 1.0 |
| 11 | 1.0 | 10.0 | 1.0 | 348.0 |
| 12 | 2.0 | 10.0 | 3.0 | 345.0 |
| 13 | 2.0 | 10.0 | 0.0 | 348.0 |
| 14 | 2.0 | 3.0 | 10.0 | 345.0 |
| 15 | 24.0 | 5.0 | 328.0 | 3.0 |
| 16 | 188.0 | 6.0 | 149.0 | 17.0 |
| 17 | 2.0 | 10.0 | 0.0 | 348.0 |
| 18 | 11.0 | 12.0 | 23.0 | 314.0 |
| 19 | 344.0 | 7.0 | 4.0 | 5.0 |
| 20 | 2.0 | 314.0 | 10.0 | 34.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.505 | -1.547 | -1.844 | 1.266 |
| 02 | 1.135 | -3.611 | -0.29 | -2.167 |
| 03 | -2.076 | 1.314 | -3.271 | -2.167 |
| 04 | -4.13 | 1.357 | -3.611 | -2.649 |
| 05 | 1.32 | -3.611 | -2.076 | -2.268 |
| 06 | -3.271 | -0.116 | -2.816 | 1.102 |
| 07 | 0.511 | -3.611 | 0.814 | -3.018 |
| 08 | -3.611 | 1.314 | -3.611 | -1.497 |
| 09 | -2.268 | -2.649 | -2.649 | 1.323 |
| 10 | -1.777 | -3.018 | 1.323 | -3.611 |
| 11 | -3.611 | -2.076 | -3.611 | 1.34 |
| 12 | -3.271 | -2.076 | -3.018 | 1.332 |
| 13 | -3.271 | -2.076 | -4.13 | 1.34 |
| 14 | -3.271 | -3.018 | -2.076 | 1.332 |
| 15 | -1.278 | -2.649 | 1.281 | -3.018 |
| 16 | 0.728 | -2.505 | 0.498 | -1.6 |
| 17 | -3.271 | -2.076 | -4.13 | 1.34 |
| 18 | -1.993 | -1.915 | -1.319 | 1.238 |
| 19 | 1.329 | -2.379 | -2.816 | -2.649 |
| 20 | -3.271 | 1.238 | -2.076 | -0.947 |