Model info
| Transcription factor | ZNF260 (GeneCards) | ||||||||
| Model | ZN260_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 24 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TTTdYATRGCTGYATASTATTCCA | ||||||||
| Best auROC (human) | 0.921 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 443 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZNF146-like factors {2.3.3.55} | ||||||||
| HGNC | HGNC:13499 | ||||||||
| EntrezGene | GeneID:339324 (SSTAR profile) | ||||||||
| UniProt ID | ZN260_HUMAN | ||||||||
| UniProt AC | Q3ZCT1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF260 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF260 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 36.25 | 17.25 | 7.25 | 382.25 |
| 02 | 15.25 | 12.25 | 16.25 | 399.25 |
| 03 | 11.25 | 11.25 | 27.25 | 393.25 |
| 04 | 152.25 | 28.25 | 63.25 | 199.25 |
| 05 | 27.25 | 111.25 | 50.25 | 254.25 |
| 06 | 397.25 | 14.25 | 11.25 | 20.25 |
| 07 | 4.25 | 115.25 | 6.25 | 317.25 |
| 08 | 95.25 | 6.25 | 261.25 | 80.25 |
| 09 | 42.25 | 4.25 | 391.25 | 5.25 |
| 10 | 0.25 | 305.25 | 2.25 | 135.25 |
| 11 | 9.25 | 10.25 | 3.25 | 420.25 |
| 12 | 11.25 | 53.25 | 366.25 | 12.25 |
| 13 | 61.0 | 312.0 | 2.0 | 68.0 |
| 14 | 348.0 | 6.0 | 87.0 | 2.0 |
| 15 | 0.0 | 6.0 | 2.0 | 435.0 |
| 16 | 369.0 | 2.0 | 16.0 | 56.0 |
| 17 | 60.0 | 84.0 | 291.0 | 8.0 |
| 18 | 5.0 | 9.0 | 26.0 | 403.0 |
| 19 | 425.0 | 0.0 | 8.0 | 10.0 |
| 20 | 2.0 | 52.0 | 7.0 | 382.0 |
| 21 | 3.0 | 2.0 | 1.0 | 437.0 |
| 22 | 0.0 | 421.0 | 0.0 | 22.0 |
| 23 | 9.0 | 418.0 | 1.0 | 15.0 |
| 24 | 372.0 | 22.0 | 20.0 | 29.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.089 | -1.788 | -2.549 | 1.229 |
| 02 | -1.901 | -2.098 | -1.843 | 1.272 |
| 03 | -2.174 | -2.174 | -1.361 | 1.257 |
| 04 | 0.315 | -1.327 | -0.55 | 0.581 |
| 05 | -1.361 | 0.004 | -0.774 | 0.823 |
| 06 | 1.267 | -1.963 | -2.174 | -1.64 |
| 07 | -2.968 | 0.039 | -2.67 | 1.044 |
| 08 | -0.149 | -2.67 | 0.85 | -0.317 |
| 09 | -0.942 | -2.968 | 1.252 | -2.808 |
| 10 | -4.148 | 1.005 | -3.393 | 0.197 |
| 11 | -2.344 | -2.255 | -3.158 | 1.324 |
| 12 | -2.174 | -0.718 | 1.187 | -2.098 |
| 13 | -0.585 | 1.027 | -3.462 | -0.479 |
| 14 | 1.136 | -2.703 | -0.238 | -3.462 |
| 15 | -4.3 | -2.703 | -3.462 | 1.358 |
| 16 | 1.194 | -3.462 | -1.857 | -0.669 |
| 17 | -0.602 | -0.272 | 0.958 | -2.467 |
| 18 | -2.846 | -2.367 | -1.406 | 1.282 |
| 19 | 1.335 | -4.3 | -2.467 | -2.277 |
| 20 | -3.462 | -0.741 | -2.578 | 1.228 |
| 21 | -3.212 | -3.462 | -3.795 | 1.362 |
| 22 | -4.3 | 1.325 | -4.3 | -1.563 |
| 23 | -2.367 | 1.318 | -3.795 | -1.916 |
| 24 | 1.202 | -1.563 | -1.652 | -1.302 |