Model info
| Transcription factor | ZNF350 (GeneCards) | ||||||||
| Model | ZN350_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdbbYYYTTYhWdhYYhd | ||||||||
| Best auROC (human) | 0.978 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 501 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZNF350-like factors {2.3.3.30} | ||||||||
| HGNC | HGNC:16656 | ||||||||
| EntrezGene | GeneID:59348 (SSTAR profile) | ||||||||
| UniProt ID | ZN350_HUMAN | ||||||||
| UniProt AC | Q9GZX5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF350 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF350 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 105.0 | 240.0 | 96.0 | 59.0 |
| 02 | 250.0 | 22.0 | 115.0 | 113.0 |
| 03 | 31.0 | 78.0 | 283.0 | 108.0 |
| 04 | 43.0 | 178.0 | 79.0 | 200.0 |
| 05 | 33.0 | 287.0 | 28.0 | 152.0 |
| 06 | 24.0 | 267.0 | 27.0 | 182.0 |
| 07 | 38.0 | 70.0 | 9.0 | 383.0 |
| 08 | 1.0 | 9.0 | 8.0 | 482.0 |
| 09 | 3.0 | 14.0 | 9.0 | 474.0 |
| 10 | 25.0 | 56.0 | 31.0 | 388.0 |
| 11 | 260.0 | 95.0 | 59.0 | 86.0 |
| 12 | 116.0 | 18.0 | 38.0 | 328.0 |
| 13 | 122.0 | 32.0 | 217.0 | 129.0 |
| 14 | 239.0 | 91.0 | 43.0 | 127.0 |
| 15 | 24.0 | 341.0 | 53.0 | 82.0 |
| 16 | 20.0 | 335.0 | 28.0 | 117.0 |
| 17 | 161.0 | 98.0 | 55.0 | 186.0 |
| 18 | 214.0 | 66.0 | 121.0 | 99.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.172 | 0.646 | -0.26 | -0.737 |
| 02 | 0.687 | -1.681 | -0.082 | -0.1 |
| 03 | -1.358 | -0.464 | 0.81 | -0.144 |
| 04 | -1.044 | 0.35 | -0.452 | 0.465 |
| 05 | -1.298 | 0.824 | -1.454 | 0.193 |
| 06 | -1.6 | 0.752 | -1.489 | 0.372 |
| 07 | -1.163 | -0.57 | -2.484 | 1.111 |
| 08 | -3.903 | -2.484 | -2.584 | 1.34 |
| 09 | -3.325 | -2.096 | -2.484 | 1.324 |
| 10 | -1.561 | -0.788 | -1.358 | 1.124 |
| 11 | 0.726 | -0.271 | -0.737 | -0.368 |
| 12 | -0.074 | -1.868 | -1.163 | 0.957 |
| 13 | -0.024 | -1.328 | 0.546 | 0.031 |
| 14 | 0.642 | -0.313 | -1.044 | 0.016 |
| 15 | -1.6 | 0.996 | -0.841 | -0.415 |
| 16 | -1.77 | 0.978 | -1.454 | -0.065 |
| 17 | 0.25 | -0.24 | -0.805 | 0.393 |
| 18 | 0.533 | -0.628 | -0.032 | -0.23 |