We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZNF418
(GeneCards)
ModelZN418_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusTGYTTYYRKYYdMYbnb
Best auROC (human)0.906
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words500
TF familyFactors with multiple dispersed zinc fingers {2.3.4}
TF subfamilyZNF417-like factors {2.3.4.1}
HGNCHGNC:20647
EntrezGeneGeneID:147686
(SSTAR profile)
UniProt IDZN418_HUMAN
UniProt ACQ8TF45
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.0476600000000005
0.0005 6.02136
0.0001 8.01811
GTEx tissue expression atlas ZNF418 expression
ReMap ChIP-seq dataset list ZNF418 datasets
Motifs in JASPAR
PCM
ACGT
0126.06.021.0447.0
0219.08.0457.016.0
03108.0272.09.0111.0
0413.028.04.0455.0
051.025.011.0463.0
0616.0221.029.0234.0
0729.0143.011.0317.0
08291.09.0178.022.0
099.017.0317.0157.0
105.0335.012.0148.0
115.0278.01.0216.0
12110.060.070.0260.0
1390.0323.059.028.0
1478.0114.06.0302.0
1540.051.0143.0266.0
16103.0188.0119.090.0
1764.0235.082.0119.0
PWM
ACGT
01-1.525-2.819-1.7251.265
02-1.818-2.5841.287-1.975
03-0.1440.771-2.484-0.117
04-2.163-1.454-3.1261.283
05-3.903-1.561-2.3111.3
06-1.9750.565-1.4210.621
07-1.4210.133-2.3110.923
080.838-2.4840.35-1.681
09-2.484-1.920.9230.225
10-2.9610.978-2.2340.167
11-2.9610.793-3.9030.542
12-0.126-0.721-0.570.726
13-0.3240.942-0.737-1.454
14-0.464-0.091-2.8190.875
15-1.114-0.8790.1330.749
16-0.1910.404-0.049-0.324
17-0.6580.626-0.415-0.049