We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZNF418
(GeneCards)
ModelZN418_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
1
ConsensusdvhTGMTTYYRK
Best auROC (human)0.791
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words500
TF familyFactors with multiple dispersed zinc fingers {2.3.4}
TF subfamilyZNF417-like factors {2.3.4.1}
HGNCHGNC:20647
EntrezGeneGeneID:147686
(SSTAR profile)
UniProt IDZN418_HUMAN
UniProt ACQ8TF45
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.67261
0.0005 6.510145
0.0001 8.16029
GTEx tissue expression atlas ZNF418 expression
ReMap ChIP-seq dataset list ZNF418 datasets
Motifs in JASPAR
PCM
ACGT
0195.061.0137.0207.0
02104.096.0205.095.0
03112.082.052.0254.0
0462.00.046.0392.0
0517.012.0470.01.0
06122.0324.09.045.0
073.050.00.0447.0
081.016.09.0474.0
0910.0252.012.0226.0
108.0162.012.0318.0
11276.02.0197.025.0
123.08.0322.0167.0
PWM
ACGT
01-0.271-0.7050.0910.5
02-0.181-0.260.49-0.271
03-0.108-0.415-0.860.703
04-0.689-4.4-0.9791.135
05-1.92-2.2341.315-3.903
06-0.0240.945-2.484-1.0
07-3.325-0.898-4.41.265
08-3.903-1.975-2.4841.324
09-2.3940.695-2.2340.587
10-2.5840.256-2.2340.926
110.785-3.5730.45-1.561
12-3.325-2.5840.9390.287