Model info
| Transcription factor | ZNF490 (GeneCards) | ||||||||
| Model | ZN490_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 24 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TRdGTYTCTTGWAGRCAGCAKAYM | ||||||||
| Best auROC (human) | 0.989 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 430 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZNF763-like factors {2.3.3.33} | ||||||||
| HGNC | HGNC:23705 | ||||||||
| EntrezGene | GeneID:57474 (SSTAR profile) | ||||||||
| UniProt ID | ZN490_HUMAN | ||||||||
| UniProt AC | Q9ULM2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF490 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF490 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 15.0 | 24.0 | 13.0 | 378.0 |
| 02 | 65.0 | 8.0 | 333.0 | 24.0 |
| 03 | 146.0 | 5.0 | 174.0 | 105.0 |
| 04 | 18.0 | 5.0 | 403.0 | 4.0 |
| 05 | 2.0 | 7.0 | 13.0 | 408.0 |
| 06 | 8.0 | 271.0 | 4.0 | 147.0 |
| 07 | 1.0 | 4.0 | 2.0 | 423.0 |
| 08 | 3.0 | 425.0 | 2.0 | 0.0 |
| 09 | 1.0 | 22.0 | 0.0 | 407.0 |
| 10 | 1.0 | 3.0 | 6.0 | 420.0 |
| 11 | 4.0 | 2.0 | 422.0 | 2.0 |
| 12 | 213.0 | 11.0 | 5.0 | 201.0 |
| 13 | 416.0 | 2.0 | 8.0 | 4.0 |
| 14 | 40.0 | 4.0 | 365.0 | 21.0 |
| 15 | 209.0 | 1.0 | 219.0 | 1.0 |
| 16 | 2.0 | 428.0 | 0.0 | 0.0 |
| 17 | 428.0 | 0.0 | 2.0 | 0.0 |
| 18 | 93.0 | 0.0 | 337.0 | 0.0 |
| 19 | 2.0 | 427.0 | 1.0 | 0.0 |
| 20 | 430.0 | 0.0 | 0.0 | 0.0 |
| 21 | 20.0 | 34.0 | 127.0 | 249.0 |
| 22 | 418.0 | 1.0 | 10.0 | 1.0 |
| 23 | 20.0 | 182.0 | 3.0 | 225.0 |
| 24 | 158.0 | 228.0 | 8.0 | 36.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.887 | -1.452 | -2.016 | 1.247 |
| 02 | -0.494 | -2.439 | 1.121 | -1.452 |
| 03 | 0.302 | -2.817 | 0.476 | -0.023 |
| 04 | -1.72 | -2.817 | 1.311 | -2.984 |
| 05 | -3.434 | -2.55 | -2.016 | 1.323 |
| 06 | -2.439 | 0.916 | -2.984 | 0.309 |
| 07 | -3.769 | -2.984 | -3.434 | 1.359 |
| 08 | -3.184 | 1.364 | -3.434 | -4.275 |
| 09 | -3.769 | -1.534 | -4.275 | 1.321 |
| 10 | -3.769 | -3.184 | -2.674 | 1.352 |
| 11 | -2.984 | -3.434 | 1.357 | -3.434 |
| 12 | 0.677 | -2.164 | -2.817 | 0.619 |
| 13 | 1.343 | -3.434 | -2.439 | -2.984 |
| 14 | -0.965 | -2.984 | 1.213 | -1.577 |
| 15 | 0.658 | -3.769 | 0.704 | -3.769 |
| 16 | -3.434 | 1.371 | -4.275 | -4.275 |
| 17 | 1.371 | -4.275 | -3.434 | -4.275 |
| 18 | -0.143 | -4.275 | 1.133 | -4.275 |
| 19 | -3.434 | 1.369 | -3.769 | -4.275 |
| 20 | 1.376 | -4.275 | -4.275 | -4.275 |
| 21 | -1.623 | -1.122 | 0.165 | 0.832 |
| 22 | 1.348 | -3.769 | -2.248 | -3.769 |
| 23 | -1.623 | 0.521 | -3.184 | 0.731 |
| 24 | 0.381 | 0.744 | -2.439 | -1.067 |