Model info
| Transcription factor | ZNF549 (GeneCards) | ||||||||
| Model | ZN549_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WdYYAKSRRYhGGRCAGCMb | ||||||||
| Best auROC (human) | 0.948 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:26632 | ||||||||
| EntrezGene | GeneID:256051 (SSTAR profile) | ||||||||
| UniProt ID | ZN549_HUMAN | ||||||||
| UniProt AC | Q6P9A3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF549 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF549 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 289.25 | 30.25 | 31.25 | 149.25 |
| 02 | 67.25 | 59.25 | 95.25 | 278.25 |
| 03 | 27.25 | 67.25 | 33.25 | 372.25 |
| 04 | 22.25 | 367.25 | 7.25 | 103.25 |
| 05 | 478.25 | 5.25 | 6.25 | 10.25 |
| 06 | 36.25 | 17.25 | 118.25 | 328.25 |
| 07 | 29.25 | 91.25 | 308.25 | 71.25 |
| 08 | 311.25 | 62.25 | 88.25 | 38.25 |
| 09 | 361.25 | 16.25 | 90.25 | 32.25 |
| 10 | 52.25 | 168.25 | 17.25 | 262.25 |
| 11 | 94.25 | 119.25 | 17.25 | 269.25 |
| 12 | 91.25 | 1.25 | 392.25 | 15.25 |
| 13 | 12.25 | 6.25 | 475.25 | 6.25 |
| 14 | 75.25 | 37.25 | 382.25 | 5.25 |
| 15 | 27.25 | 462.25 | 3.25 | 7.25 |
| 16 | 420.25 | 10.25 | 26.25 | 43.25 |
| 17 | 13.25 | 36.25 | 442.25 | 8.25 |
| 18 | 9.0 | 420.0 | 49.0 | 22.0 |
| 19 | 313.0 | 97.0 | 29.0 | 61.0 |
| 20 | 70.0 | 227.0 | 77.0 | 126.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.832 | -1.381 | -1.35 | 0.175 |
| 02 | -0.609 | -0.733 | -0.268 | 0.793 |
| 03 | -1.48 | -0.609 | -1.291 | 1.083 |
| 04 | -1.671 | 1.07 | -2.665 | -0.189 |
| 05 | 1.333 | -2.923 | -2.786 | -2.372 |
| 06 | -1.208 | -1.907 | -0.055 | 0.958 |
| 07 | -1.413 | -0.31 | 0.895 | -0.553 |
| 08 | 0.905 | -0.685 | -0.343 | -1.157 |
| 09 | 1.053 | -1.961 | -0.321 | -1.32 |
| 10 | -0.855 | 0.294 | -1.907 | 0.735 |
| 11 | -0.278 | -0.046 | -1.907 | 0.761 |
| 12 | -0.31 | -3.81 | 1.135 | -2.019 |
| 13 | -2.216 | -2.786 | 1.326 | -2.786 |
| 14 | -0.499 | -1.182 | 1.109 | -2.923 |
| 15 | -1.48 | 1.299 | -3.271 | -2.665 |
| 16 | 1.204 | -2.372 | -1.515 | -1.038 |
| 17 | -2.146 | -1.208 | 1.255 | -2.558 |
| 18 | -2.484 | 1.203 | -0.918 | -1.681 |
| 19 | 0.91 | -0.25 | -1.421 | -0.705 |
| 20 | -0.57 | 0.591 | -0.477 | 0.008 |