We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZNF554
(GeneCards)
ModelZN554_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
C
Motif rank
0
ConsensusndRChGRGYCRndbRRdbdvYdn
Best auROC (human)0.88
Best auROC (mouse)
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)
Aligned words507
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyunclassified {2.3.3.0}
HGNCHGNC:26629
EntrezGeneGeneID:115196
(SSTAR profile)
UniProt IDZN554_HUMAN
UniProt ACQ86TJ5
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.906910000000001
0.0005 9.74841
0.0001 13.63121
GTEx tissue expression atlas ZNF554 expression
ReMap ChIP-seq dataset list ZNF554 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0125.011.034.013.055.019.015.079.061.012.031.042.026.06.032.039.0
0254.010.097.06.011.011.020.06.022.019.060.011.022.011.0130.010.0
038.074.01.026.03.043.01.04.010.0270.07.020.04.022.02.05.0
042.09.06.08.0152.062.035.0160.03.04.00.04.09.02.033.011.0
0515.012.0132.07.012.09.046.010.01.05.060.08.02.010.0167.04.0
0614.00.012.04.030.01.04.01.0283.04.0111.07.06.00.023.00.0
0736.02.0294.01.02.01.02.00.025.017.0105.03.01.00.09.02.0
081.018.00.045.01.00.00.019.02.0267.016.0125.00.02.01.03.0
090.04.00.00.04.0278.00.05.00.016.00.01.02.0186.00.04.0
100.01.03.02.0370.029.051.034.00.00.00.00.01.02.03.04.0
1163.0103.081.0124.03.07.05.017.04.026.014.013.05.011.014.010.0
1218.09.042.06.035.021.025.066.021.026.060.07.025.038.079.022.0
136.016.012.065.010.011.019.054.016.042.021.0127.013.016.038.034.0
1415.01.020.09.052.01.011.021.044.05.027.014.0101.09.0155.015.0
1538.013.0151.010.03.08.05.00.013.015.0175.010.09.03.042.05.0
1613.01.020.029.09.013.05.012.066.028.0170.0109.05.03.08.09.0
176.012.055.020.06.016.04.019.026.018.064.095.018.015.096.030.0
183.06.022.025.020.09.03.029.040.027.043.0109.010.014.074.066.0
1922.013.030.08.032.09.07.08.034.022.069.017.0108.011.098.012.0
2013.0165.012.06.018.020.05.012.025.0122.021.036.02.026.013.04.0
2111.013.019.015.057.036.023.0217.09.013.017.012.06.09.022.021.0
2217.013.034.019.021.017.03.030.015.020.031.015.085.051.087.042.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.22-1.0220.083-0.860.56-0.49-0.7210.920.663-0.938-0.0080.293-0.181-1.60.0230.219
020.542-1.1141.124-1.6-1.022-1.022-0.439-1.6-0.346-0.490.646-1.022-0.346-1.0221.416-1.114
03-1.3280.855-3.126-0.181-2.2340.316-3.126-1.975-1.1142.145-1.454-0.439-1.975-0.346-2.584-1.77
04-2.584-1.215-1.6-1.3281.5720.6790.1121.623-2.234-1.975-4.4-1.975-1.215-2.5840.054-1.022
05-0.721-0.9381.431-1.454-0.938-1.2150.383-1.114-3.126-1.770.646-1.328-2.584-1.1141.666-1.975
06-0.788-4.4-0.938-1.975-0.04-3.126-1.975-3.1262.192-1.9751.259-1.454-1.6-4.4-0.302-4.4
070.14-2.5842.231-3.126-2.584-3.126-2.584-4.4-0.22-0.5991.203-2.234-3.126-4.4-1.215-2.584
08-3.126-0.543-4.40.361-3.126-4.4-4.4-0.49-2.5842.134-0.6581.377-4.4-2.584-3.126-2.234
09-4.4-1.975-4.4-4.4-1.9752.175-4.4-1.77-4.4-0.658-4.4-3.126-2.5841.773-4.4-1.975
10-4.4-3.126-2.234-2.5842.46-0.0740.4850.083-4.4-4.4-4.4-4.4-3.126-2.584-2.234-1.975
110.6951.1840.9451.369-2.234-1.454-1.77-0.599-1.975-0.181-0.788-0.86-1.77-1.022-0.788-1.114
12-0.543-1.2150.293-1.60.112-0.392-0.220.741-0.392-0.1810.646-1.454-0.220.1930.92-0.346
13-1.6-0.658-0.9380.726-1.114-1.022-0.490.542-0.6580.293-0.3921.393-0.86-0.6580.1930.083
14-0.721-3.126-0.439-1.2150.504-3.126-1.022-0.3920.339-1.77-0.144-0.7881.165-1.2151.592-0.721
150.193-0.861.565-1.114-2.234-1.328-1.77-4.4-0.86-0.7211.713-1.114-1.215-2.2340.293-1.77
16-0.86-3.126-0.439-0.074-1.215-0.86-1.77-0.9380.741-0.1081.6841.241-1.77-2.234-1.328-1.215
17-1.6-0.9380.56-0.439-1.6-0.658-1.975-0.49-0.181-0.5430.7111.104-0.543-0.7211.114-0.04
18-2.234-1.6-0.346-0.22-0.439-1.215-2.234-0.0740.244-0.1440.3161.241-1.114-0.7880.8550.741
19-0.346-0.86-0.04-1.3280.023-1.215-1.454-1.3280.083-0.3460.785-0.5991.231-1.0221.135-0.938
20-0.861.654-0.938-1.6-0.543-0.439-1.77-0.938-0.221.353-0.3920.14-2.584-0.181-0.86-1.975
21-1.022-0.86-0.49-0.7210.5950.14-0.3021.927-1.215-0.86-0.599-0.938-1.6-1.215-0.346-0.392
22-0.599-0.860.083-0.49-0.392-0.599-2.234-0.04-0.721-0.439-0.008-0.7210.9930.4851.0160.293