Transcription factor | ZNF554 (GeneCards) | ||||||||
Model | ZN554_HUMAN.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 23 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | ndRChGRGYCRndbRRdbdvYdn | ||||||||
Best auROC (human) | 0.88 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 507 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | unclassified {2.3.3.0} | ||||||||
HGNC | HGNC:26629 | ||||||||
EntrezGene | GeneID:115196 (SSTAR profile) | ||||||||
UniProt ID | ZN554_HUMAN | ||||||||
UniProt AC | Q86TJ5 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | ZNF554 expression | ||||||||
ReMap ChIP-seq dataset list | ZNF554 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 25.0 | 11.0 | 34.0 | 13.0 | 55.0 | 19.0 | 15.0 | 79.0 | 61.0 | 12.0 | 31.0 | 42.0 | 26.0 | 6.0 | 32.0 | 39.0 |
02 | 54.0 | 10.0 | 97.0 | 6.0 | 11.0 | 11.0 | 20.0 | 6.0 | 22.0 | 19.0 | 60.0 | 11.0 | 22.0 | 11.0 | 130.0 | 10.0 |
03 | 8.0 | 74.0 | 1.0 | 26.0 | 3.0 | 43.0 | 1.0 | 4.0 | 10.0 | 270.0 | 7.0 | 20.0 | 4.0 | 22.0 | 2.0 | 5.0 |
04 | 2.0 | 9.0 | 6.0 | 8.0 | 152.0 | 62.0 | 35.0 | 160.0 | 3.0 | 4.0 | 0.0 | 4.0 | 9.0 | 2.0 | 33.0 | 11.0 |
05 | 15.0 | 12.0 | 132.0 | 7.0 | 12.0 | 9.0 | 46.0 | 10.0 | 1.0 | 5.0 | 60.0 | 8.0 | 2.0 | 10.0 | 167.0 | 4.0 |
06 | 14.0 | 0.0 | 12.0 | 4.0 | 30.0 | 1.0 | 4.0 | 1.0 | 283.0 | 4.0 | 111.0 | 7.0 | 6.0 | 0.0 | 23.0 | 0.0 |
07 | 36.0 | 2.0 | 294.0 | 1.0 | 2.0 | 1.0 | 2.0 | 0.0 | 25.0 | 17.0 | 105.0 | 3.0 | 1.0 | 0.0 | 9.0 | 2.0 |
08 | 1.0 | 18.0 | 0.0 | 45.0 | 1.0 | 0.0 | 0.0 | 19.0 | 2.0 | 267.0 | 16.0 | 125.0 | 0.0 | 2.0 | 1.0 | 3.0 |
09 | 0.0 | 4.0 | 0.0 | 0.0 | 4.0 | 278.0 | 0.0 | 5.0 | 0.0 | 16.0 | 0.0 | 1.0 | 2.0 | 186.0 | 0.0 | 4.0 |
10 | 0.0 | 1.0 | 3.0 | 2.0 | 370.0 | 29.0 | 51.0 | 34.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 2.0 | 3.0 | 4.0 |
11 | 63.0 | 103.0 | 81.0 | 124.0 | 3.0 | 7.0 | 5.0 | 17.0 | 4.0 | 26.0 | 14.0 | 13.0 | 5.0 | 11.0 | 14.0 | 10.0 |
12 | 18.0 | 9.0 | 42.0 | 6.0 | 35.0 | 21.0 | 25.0 | 66.0 | 21.0 | 26.0 | 60.0 | 7.0 | 25.0 | 38.0 | 79.0 | 22.0 |
13 | 6.0 | 16.0 | 12.0 | 65.0 | 10.0 | 11.0 | 19.0 | 54.0 | 16.0 | 42.0 | 21.0 | 127.0 | 13.0 | 16.0 | 38.0 | 34.0 |
14 | 15.0 | 1.0 | 20.0 | 9.0 | 52.0 | 1.0 | 11.0 | 21.0 | 44.0 | 5.0 | 27.0 | 14.0 | 101.0 | 9.0 | 155.0 | 15.0 |
15 | 38.0 | 13.0 | 151.0 | 10.0 | 3.0 | 8.0 | 5.0 | 0.0 | 13.0 | 15.0 | 175.0 | 10.0 | 9.0 | 3.0 | 42.0 | 5.0 |
16 | 13.0 | 1.0 | 20.0 | 29.0 | 9.0 | 13.0 | 5.0 | 12.0 | 66.0 | 28.0 | 170.0 | 109.0 | 5.0 | 3.0 | 8.0 | 9.0 |
17 | 6.0 | 12.0 | 55.0 | 20.0 | 6.0 | 16.0 | 4.0 | 19.0 | 26.0 | 18.0 | 64.0 | 95.0 | 18.0 | 15.0 | 96.0 | 30.0 |
18 | 3.0 | 6.0 | 22.0 | 25.0 | 20.0 | 9.0 | 3.0 | 29.0 | 40.0 | 27.0 | 43.0 | 109.0 | 10.0 | 14.0 | 74.0 | 66.0 |
19 | 22.0 | 13.0 | 30.0 | 8.0 | 32.0 | 9.0 | 7.0 | 8.0 | 34.0 | 22.0 | 69.0 | 17.0 | 108.0 | 11.0 | 98.0 | 12.0 |
20 | 13.0 | 165.0 | 12.0 | 6.0 | 18.0 | 20.0 | 5.0 | 12.0 | 25.0 | 122.0 | 21.0 | 36.0 | 2.0 | 26.0 | 13.0 | 4.0 |
21 | 11.0 | 13.0 | 19.0 | 15.0 | 57.0 | 36.0 | 23.0 | 217.0 | 9.0 | 13.0 | 17.0 | 12.0 | 6.0 | 9.0 | 22.0 | 21.0 |
22 | 17.0 | 13.0 | 34.0 | 19.0 | 21.0 | 17.0 | 3.0 | 30.0 | 15.0 | 20.0 | 31.0 | 15.0 | 85.0 | 51.0 | 87.0 | 42.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.22 | -1.022 | 0.083 | -0.86 | 0.56 | -0.49 | -0.721 | 0.92 | 0.663 | -0.938 | -0.008 | 0.293 | -0.181 | -1.6 | 0.023 | 0.219 |
02 | 0.542 | -1.114 | 1.124 | -1.6 | -1.022 | -1.022 | -0.439 | -1.6 | -0.346 | -0.49 | 0.646 | -1.022 | -0.346 | -1.022 | 1.416 | -1.114 |
03 | -1.328 | 0.855 | -3.126 | -0.181 | -2.234 | 0.316 | -3.126 | -1.975 | -1.114 | 2.145 | -1.454 | -0.439 | -1.975 | -0.346 | -2.584 | -1.77 |
04 | -2.584 | -1.215 | -1.6 | -1.328 | 1.572 | 0.679 | 0.112 | 1.623 | -2.234 | -1.975 | -4.4 | -1.975 | -1.215 | -2.584 | 0.054 | -1.022 |
05 | -0.721 | -0.938 | 1.431 | -1.454 | -0.938 | -1.215 | 0.383 | -1.114 | -3.126 | -1.77 | 0.646 | -1.328 | -2.584 | -1.114 | 1.666 | -1.975 |
06 | -0.788 | -4.4 | -0.938 | -1.975 | -0.04 | -3.126 | -1.975 | -3.126 | 2.192 | -1.975 | 1.259 | -1.454 | -1.6 | -4.4 | -0.302 | -4.4 |
07 | 0.14 | -2.584 | 2.231 | -3.126 | -2.584 | -3.126 | -2.584 | -4.4 | -0.22 | -0.599 | 1.203 | -2.234 | -3.126 | -4.4 | -1.215 | -2.584 |
08 | -3.126 | -0.543 | -4.4 | 0.361 | -3.126 | -4.4 | -4.4 | -0.49 | -2.584 | 2.134 | -0.658 | 1.377 | -4.4 | -2.584 | -3.126 | -2.234 |
09 | -4.4 | -1.975 | -4.4 | -4.4 | -1.975 | 2.175 | -4.4 | -1.77 | -4.4 | -0.658 | -4.4 | -3.126 | -2.584 | 1.773 | -4.4 | -1.975 |
10 | -4.4 | -3.126 | -2.234 | -2.584 | 2.46 | -0.074 | 0.485 | 0.083 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -2.584 | -2.234 | -1.975 |
11 | 0.695 | 1.184 | 0.945 | 1.369 | -2.234 | -1.454 | -1.77 | -0.599 | -1.975 | -0.181 | -0.788 | -0.86 | -1.77 | -1.022 | -0.788 | -1.114 |
12 | -0.543 | -1.215 | 0.293 | -1.6 | 0.112 | -0.392 | -0.22 | 0.741 | -0.392 | -0.181 | 0.646 | -1.454 | -0.22 | 0.193 | 0.92 | -0.346 |
13 | -1.6 | -0.658 | -0.938 | 0.726 | -1.114 | -1.022 | -0.49 | 0.542 | -0.658 | 0.293 | -0.392 | 1.393 | -0.86 | -0.658 | 0.193 | 0.083 |
14 | -0.721 | -3.126 | -0.439 | -1.215 | 0.504 | -3.126 | -1.022 | -0.392 | 0.339 | -1.77 | -0.144 | -0.788 | 1.165 | -1.215 | 1.592 | -0.721 |
15 | 0.193 | -0.86 | 1.565 | -1.114 | -2.234 | -1.328 | -1.77 | -4.4 | -0.86 | -0.721 | 1.713 | -1.114 | -1.215 | -2.234 | 0.293 | -1.77 |
16 | -0.86 | -3.126 | -0.439 | -0.074 | -1.215 | -0.86 | -1.77 | -0.938 | 0.741 | -0.108 | 1.684 | 1.241 | -1.77 | -2.234 | -1.328 | -1.215 |
17 | -1.6 | -0.938 | 0.56 | -0.439 | -1.6 | -0.658 | -1.975 | -0.49 | -0.181 | -0.543 | 0.711 | 1.104 | -0.543 | -0.721 | 1.114 | -0.04 |
18 | -2.234 | -1.6 | -0.346 | -0.22 | -0.439 | -1.215 | -2.234 | -0.074 | 0.244 | -0.144 | 0.316 | 1.241 | -1.114 | -0.788 | 0.855 | 0.741 |
19 | -0.346 | -0.86 | -0.04 | -1.328 | 0.023 | -1.215 | -1.454 | -1.328 | 0.083 | -0.346 | 0.785 | -0.599 | 1.231 | -1.022 | 1.135 | -0.938 |
20 | -0.86 | 1.654 | -0.938 | -1.6 | -0.543 | -0.439 | -1.77 | -0.938 | -0.22 | 1.353 | -0.392 | 0.14 | -2.584 | -0.181 | -0.86 | -1.975 |
21 | -1.022 | -0.86 | -0.49 | -0.721 | 0.595 | 0.14 | -0.302 | 1.927 | -1.215 | -0.86 | -0.599 | -0.938 | -1.6 | -1.215 | -0.346 | -0.392 |
22 | -0.599 | -0.86 | 0.083 | -0.49 | -0.392 | -0.599 | -2.234 | -0.04 | -0.721 | -0.439 | -0.008 | -0.721 | 0.993 | 0.485 | 1.016 | 0.293 |