Model info
| Transcription factor | ZNF554 (GeneCards) | ||||||||
| Model | ZN554_HUMAN.H11MO.1.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | D | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RCWGAGYCM | ||||||||
| Best auROC (human) | 0.774 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:26629 | ||||||||
| EntrezGene | GeneID:115196 (SSTAR profile) | ||||||||
| UniProt ID | ZN554_HUMAN | ||||||||
| UniProt AC | Q86TJ5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF554 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF554 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 105.25 | 58.25 | 306.25 | 30.25 |
| 02 | 32.25 | 451.25 | 15.25 | 1.25 |
| 03 | 235.25 | 27.25 | 24.25 | 213.25 |
| 04 | 10.25 | 17.25 | 466.25 | 6.25 |
| 05 | 419.25 | 3.25 | 74.25 | 3.25 |
| 06 | 18.25 | 15.25 | 463.25 | 3.25 |
| 07 | 5.25 | 305.25 | 34.25 | 155.25 |
| 08 | 12.0 | 484.0 | 1.0 | 3.0 |
| 09 | 356.0 | 61.0 | 30.0 | 53.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.17 | -0.75 | 0.889 | -1.381 |
| 02 | -1.32 | 1.275 | -2.019 | -3.81 |
| 03 | 0.627 | -1.48 | -1.59 | 0.529 |
| 04 | -2.372 | -1.907 | 1.307 | -2.786 |
| 05 | 1.201 | -3.271 | -0.513 | -3.271 |
| 06 | -1.855 | -2.019 | 1.301 | -3.271 |
| 07 | -2.923 | 0.886 | -1.263 | 0.214 |
| 08 | -2.234 | 1.345 | -3.903 | -3.325 |
| 09 | 1.039 | -0.705 | -1.389 | -0.841 |